Gene detail

Detail information of GWHGAAEX003283/evm.TU.scaffold_131.14

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1073	9.00E-29	Uncharacterized mRNA-associated protein RAP55
nr	gi\|672118389\|ref\|XP_008782402.1\|	4.34E-98	PREDICTED: protein decapping 5-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9C658\|DCP5_ARATH	4.00E-46	Protein decapping 5
trEMBL	tr\|M0S1N2\|M0S1N2_MUSAM	4.00E-92	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P20740_001}
TAIR	AT5G45330	9.00E-29	decapping 5-like

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000136	563938	633430	+

Transcript Sequence
>GWHTAAEX003283 TTGGGAACTTCTTTTGCTTTCAAGCAAACCGTTCTACTGTTTTAATGGCTGAAATCTCGAAGAGGGAACTGTGATAAATCTGCATTTCAGCCGTCCGCACCCAGCTCATTTCGCACTACGGCGGTACAAACTCTCTTTTCTCTCTTCCCTTTCCTCCTGCTAAGAAATCAGGCGCGGCAATGGCGGCAGAGGTCTCTAGATCGGTGCCTCCCGCGGATTACTACATCGGAAGCCTGATAAGCCTCATTTCCAAGTTTGAGATCAGGTACGAGGGCATCCTATTCTACATAAATCCCGAGGAAGCCAGCATTGGCCTTGGAAATGTTCGTTCTTTTGGAACTGAAGGAAGAAAAAAAGATGGTCCGCAAGTTCCTCCTAATGAGAAAATATATGAATATGTACTCTTCCGAGGAAGTGATATCAAGGATTTGCATGTTAAGTCCATGGCTCCTGCTCTGGAAGAATACATAAATAATGATCCCGCTACTATTCAGTCTCAATGTTCTCCCATGGAACCAGCATCAAACTCTTCTGGGTGTGGGACTATATCAAATCAGAGTTCCCAAGAAGCTCTACTTGGAAATTCAAGGTTCACAGTTCAAGGAGGTTTACCACACAATCAACCTGAAAAAAATTTAAAATCTTGGGGTTCAGCTCTTTGCGTGTCTAATTCTTTTGGGCCTGAAATTCCATTTCATCTGCCAAAATTTTGTTCACCAATAAGCGGTGTTTCTTTTTTGCAGCAACCATCCTCACTTTTGGCATCACAAGGGTTATCAATTCCTTGTTCTCTGCCACAGTATGAACAATCTTTTAATGTAAATTCTTTGTTTCCAGCTAAAACTTTGAGTCTACACGAGTCTACCTTCTCTATGCCTCTGTCAGTCAGTACTACAACTTCAGTTTCTAGTTTTGTTCAACATCCTAATGTAAATTCATTAGTTGCAAGTACGCCTCTTTACTTTTCAGAGCTGTTTTCTTCACCGTCTCATCCAGCTATTTGCACCCCAGGCGTAATTGCCACCTCTTTGGCAGCTACAGTAGAGCCTACTCGAGTTGGTTCATTGAATACTGAATCATTACTTAACCAGCTACCTACTAGGCCGCTTGTTAACTCAGATCTTACTACAGTTTTTGGTCGTAATAAGTTGTTAGTTCCTCCTTTAGGTTCTCTTAATGATCCTAGACCATCTGTTCCTGTAAATAATACTTGTATTCCTAGTATTCCTTGTACTGAACTACCTCCACCCTTCCCCGTTCAAATGATTTCTCAGTCTTTAGCTTCAATTATTAGTTTTTCCAGTTCAACCCAGGGTGAGCCATTGTTACCTAAAGTTAATTCTTCTCAGCGGCAGCATCCTAATTCTTCTACGGTTCATTTATCCCAACCTCTGCAAACACTCCATGAAGGTACAAAATTCAAAGTATTAGAACAAAAAATAAAAACTGAATCTGAAACTTTGACCCCGGAGCTGCAACCACCAACAACATCTATGAAAGAACCATTATTGCCATTACCAGAGCCTAGTCACCGAAGGTTTAATGAAGGCACATTTTATGCTTATCACCATAGCACTGAAAGACAGGGAAGGGGCAGAGGATATGCGTTTTCGGAGCCAGTAAGCAGATTTACCCAAGATTTCGATTTCGCCGCAATGAATGAAAAGTTCAACAAGGAGGAAGTGTGGGGACTCCTCGGCAAAGGCAAAGGAATTGCAAAATATGATACAGAAGACCAGCGGCCAAATTACGCTGGCAAAATCTCGGAAGAGCACAAGGAATCTTTACGCCTCGAGATCAAGCCTGTTTACCATAAGGACGACTTCTTCGACCAACTCTCTTACACCGAGCGCAAGCCGTCTTGCCCAGAGTCGGAAAATGCCAAGTTCTCGGGGCAGTTGAAGGAAGCTAAGAACTGCGGCGATAGTCGGAAGCATAGATCAAACAGGGGAAAAGGAGGCCGTGGTTCCCGCAAAGCCGGTCGTTTGCGTGGCTTTGGCTATGGCTGAGGCAGTTGGTTTCAGTACTGTTAATTAAAATATAGAAAAGTAAAAGAAATATACTGTCAATATTTCACATTGCATTTATTTTGCTTGATGAAGGCCTTTGTCTCCATCCTATTTTCATCATTAGCACTACTTCATGATGCAATTGCCAGCGTATATGAAGGGATTTATGTTTTTCACTTTTGTATGATATGATCTACTAAATTTTTTTTTTTGAATTCAAATACTGCACTTTCAAACTTTTAAAGAATTTCTAAAAAAAAGATAATTACTTGCATGCCACCCAATTCCTG

Network for GWHGAAEX003283

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12701.6	LSM14	15	88	2.00E-29
PF09532.9	FDF	484	571	2.40E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.740
SRP064423	SRR2545915	Juvenile tuber	10.180
SRP108465	SRR5643513	five period of Gastrodia elata	4.210
	SRR5643514	five period of Gastrodia elata	4.880
	SRR5643515	five period of Gastrodia elata	4.530
	SRR5643524	five period of Gastrodia elata	4.600
	SRR5643525	five period of Gastrodia elata	3.580
	SRR5643528	five period of Gastrodia elata	3.430
	SRR5643658	five period of Gastrodia elata	2.300
	SRR5643659	five period of Gastrodia elata	5.110
	SRR5643660	five period of Gastrodia elata	4.830
	SRR5643661	five period of Gastrodia elata	5.660
	SRR5643662	five period of Gastrodia elata	4.580
	SRR5643663	five period of Gastrodia elata	5.270
	SRR5643664	five period of Gastrodia elata	4.210
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.680
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.870
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.660
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.220
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.210
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.680
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.680
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.260
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.870
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.910
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.270
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.270
SRP279888	Gastro	Gastrodia elata tuber	4.98
	Juven	Juvenile tuber	4.24
	Mother_Gastro	Mother tuber of Gastrodia elata	4.94
	Mother_Juven	Mother tuber of Juvenile	6.53