Gene detail

Detail information of GWHGAAEX003290/evm.TU.scaffold_131.23

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|672139454\|ref\|XP_008793507.1\|	PREDICTED: leucine-rich repeat extensin-like protein 4 [Phoenix dactylifera]
Swissprot	tr\|Q9T0K5\|LRX3_ARATH	Leucine-rich repeat extensin-like protein 3 (Precursor)
trEMBL	tr\|A0A067KKG6\|A0A067KKG6_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP32304.1}
TAIR	AT4G13340	Leucine-rich repeat (LRR) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000136	961347	965019	-

Transcript Sequence
>GWHTAAEX003290 CTTCGACGGCAGTAAAAGTAGGACGAAATGGGCTGTTAACTAACTAATTAATTTGTTAGAGCATATTATTATTATAATTCGGCTAACAAAATTAAGAACGTCGTTAGCCCCCAATTATGCTCCAACTAATCCAATTAAATGCAATAATTATATAGTTTTAAGAAATTCCGAGTAATAATAAATGAATTTAATATCCCTCATATTTTGGCTGGCTCACCCGCAACGCAGATAAGTTCCGGCAGAAAATCGCTGGCGCTAGCTCAGTGATTGGCTCGCAAGTTACAGCCGGGCCGGCTCAGTGCCAGCTGGACTCTCCGCCGCGGGCTACCACAACGCGTTTCCTTTCTTTTTAAAAAATATACGCGTAAAGACAAAAATGGCCCCCTATTAAATGCCAGGCACCCAGTGTTAGTAAGGCTTCATTGCCGAACATGAGGACTCCAGCGACTTTTCATTCGTCTTAGCTGTTCATTAGCTGTATCAGATGCTTCCTTCTCTTTCTATTCCCATCCCCCCCCCTTCTATCCCGCTCAAGTAAGAAACCCTAGCCGCCCCCTCCTCTCTCTCTTTCCTCAAATCGCTCTCTGCAGAAAAAGGATGAGATGAGGGGTAGCACACTACTCATTCTCTCGCATCTCTTCTTCGTCGCCGGATTCGTCGGAGAGGTCGCCGGATTTGCGAGCCGGGGACTGAGCGACGCCGAGGTCGGCCATATCAAGCACCGACAGCTTCTTTACTACCGCGATGAGTTCGGTGACAGAGGGGAGAAGGTTGTCGTTGATCCCTCCTTATTCTTCCCCAACTCTCACCTTCGCAACGCCTACATTGCGCTCCAGGCTTGGAAGCAGGCGATCGTCTCCGATCCTTCGAATCTGACCGACACATGGGTCGGATCTGGTGTGTGCGACTATGAGGGCGTTTTCTGCGCTCCCCTGCCTTCCAATCGCAGCCTCATAGTCGTTGCTGGCATCGATCTCAACCACGCCGACATCGCCGGATACCTGCCGGAGGAGCTCGGTCTGCTCACCGACCTCGCTCTGTTACACCTCAACTCCAACAGATTCTGCGGCACGCTTCCGCACCGCTTCGATCGCCTCCGCCGCCTCTTCGAGCTCGACCTCAGCAACAACCGTTTCGCCGGAAAGTTCCCTGACGTCGTGCTGCGTCTCCCGTCTCTCAAATTTCTTGACCTCCGGTTCAATGAGTTCGAAGGCTCAGTGCCTTCCCAACTCTTCGACAAGGATCTCGACGCCATCTTCCTCAATAGCAACCGACTGAGGTTCGGTATTCCTAATAACTTCGGAAACTCGCCGGTATCCGTCATCGTCCTCGCCCACAACCAGTTCGGCGGATGCCTGCCGGCGAGCATTAGCAACATGTCCAAGACGCTAAACGAGATTATCCTGATGAACAACGGCCTCAGATCTTGTTTTCCTAAGGAGATCGGACTGCTCAAGGAGCTCACAGTGTTTGATGTGAGCTTCAACGAACTTGTAGGCCCGCTGCCCAACGAAATCGGGAATATGCGGAGCCTTGAGCAACTAGATGTAGCCCATAATCTCCTCTCGGGCCAAATCCCTGCTTCCATCTGCCGTCTTCCGCGACTGAACAACTTCACATATTCCTACAATTTCTTCACAGGCGAGCCGCCGATTTGCACTAGCTTGCCTTCGATAGATGATAAGCGAAACTGCTTGCCTGGCAGGCCAGCCCAGCGGACGCCTGCAAATTGTGCTGCATTCCAGCGCCATCCTGTTCGCTGCAGCTCATTCAACTGCGCACCGTTTGTTCCTCCCCTTGCTCCGCCATCCCTGCCACCTCCTTCACCCGTTTCACTTCCTCCGCCTGTCATTCCCTCTCCGCCAACCCCTTCCGGCCCTCCTCCATCTGTACCGTCATCTTCACCTCCAATCTTACCAACACCTCCAACAATCTCACCACCTTCTCTTTCCCCTCCCCTATTGCCAACTCCCCCACCTCCATCTCCATCATTTCCCCTTCCTTCGCCTCCTCCACCAACTCCTCAGTCTCCATCAATATCTCCTCCTCCATCTCCACCACCTCCATCTCCATCACCACCGCCACCATCACCACCGCCTCCACCATCGCCTCCGCCTCCATCTCAATCACCACCGCCTCCACCATCGCCTCCACCGCCATCTCCATCACCGCCACCCCCTTCACCTCCTCCACCCTCACCGCCACCCCCTTCACCTCCTCCGCCCTCACCGCCACCCCCTTCACCTCCTCCGCCCTCTCCCCCACCTTCATCTCCATCACCGCCACCTCCATCGCCGCCGCCTCCGCCGCCTTCTCTTTCCCCACCTCTTCCATCACTACCGCCGCCGCCGAAGCAACCAACTACTCCACCATATTGCACGTCTCCGCCGCCTCCTCCCATTCAACATTCTCCTCCACCTTTTCTACACGCATCTCCTCCTCCACCTCCCCTCCTCCATTCACCTCCACCCCCTAACTTACCATCTCCCCCTCCGCATTACTCTCCGCCTCCAATTCATCACTATCCTTCCCTTCCTCCTCCGTGCATCGAGCCTCCACCTCCTCCACCCCCATGTATTGAGCCTCCGCTTTCGCTCCCTCCTCCACCTCCTTCACCAATCATTTACCAATCCCCTCCTCCGCCCTCTCCGCCGCCTCCCCCGGAACACCATTACGAATCTCCGCCTCCCCCGCCGCCATTCCGACACGAATCTCCTCCGCCGCCACTTCTCTGTGAATCCCCTTCCTCTCCGCCGCCGGTCTTCGAAGGTCCGTTGCCGCCCGTAGTTGGTGTCACCTATGCATCTCCTCCGCCGCCGGCAATCCCGTACTACTGATTCTCTTGGAATCAGCCCAGAAAAAAGTAGAAGGTAGTTGTTCTTTTATTTGGTTTTATGCTCTCATATCATCGTCCATCATCCTTCTCCCTCCATTGCCGGAGGTGAACAGATTTGTAAAGAGGGAACATTCAATCCTTTGTCTATTGCAAGATTGAGAAGAGGAAGGAGGATGAGAATTAGGGTGTGGGAAATTCATATTTTCCACCATATATTTATTGCCAAGTTACGTTGGATCGAGTTTGTGAATAAGTGTGAGAGGGAGGATGCCAGGCAGACGGGACAAGAGAGGGGGACAGACAGAGAAAACCAACGCGGGTGAGAGATTATTATTTAGTTACTGAAAAAACATGAAGAATATGTATAGAGTATGCCATTGCAATAGAACAATTGGGCTAGAAGAAGCATGCATCATCATCCTCTTTCTCTTATTTACTCAATCATCATTTGTTTCATTTCATAAATTATTATTATTATTATTAACCTGTTGTTGTTGTTGTGTTCGCTCTGCTTTCTTCTTTGCTTCTCTTGAATTTCTGTCACAACCTTTACTTGTAAAAAAACTTCCACAGCCATATGCTCTGCGTGTATCTGTCATCTGCTCGCTCGCTCATACGCACAACGGTCTTTGTAATTACACGCACGAGTAAATAATAAGGCATTTTTGTCATCTGCATGTGAAAACACATGAGGCTGCTTTTTCTTTTTTTCTTTTATTATCTGCTTAACACTAAATTATTAGTATACTATCGCACTGCCATAAGATGCCGGTGGTCTTAATTATTTATCTGCTGCTACCAAATGGGGCCGTTCCGCGATCGTGACATTATGTATTT

Network for GWHGAAEX003290

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.5	LRR_8	144	201	8.80E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	33.390
SRP064423	SRR2545915	Juvenile tuber	44.230
SRP108465	SRR5643513	five period of Gastrodia elata	127.060
	SRR5643514	five period of Gastrodia elata	90.020
	SRR5643515	five period of Gastrodia elata	147.220
	SRR5643524	five period of Gastrodia elata	87.450
	SRR5643525	five period of Gastrodia elata	173.740
	SRR5643528	five period of Gastrodia elata	149.570
	SRR5643658	five period of Gastrodia elata	88.020
	SRR5643659	five period of Gastrodia elata	96.670
	SRR5643660	five period of Gastrodia elata	67.480
	SRR5643661	five period of Gastrodia elata	91.730
	SRR5643662	five period of Gastrodia elata	64.650
	SRR5643663	five period of Gastrodia elata	78.590
	SRR5643664	five period of Gastrodia elata	59.800
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	126.190
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	222.830
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	160.900
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	100.730
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	51.910
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	41.170
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	116.920
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	89.300
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	176.330
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	163.000
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	178.870
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	178.870
SRP279888	Gastro	Gastrodia elata tuber	38.13
	Juven	Juvenile tuber	37.04
	Mother_Gastro	Mother tuber of Gastrodia elata	28.31
	Mother_Juven	Mother tuber of Juvenile	43.27