Detail information of GWHGAAEX003291/evm.TU.scaffold_131.30


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|261415801|ref|YP_003249484.1|3.00E-0650S ribosomal protein L30 [Fibrobacter succinogenes subsp. succinogenes S85]
nrgi|672123369|ref|XP_008785045.1|7.61E-56PREDICTED: uncharacterized protein LOC103703818 isoform X1 [Phoenix dactylifera]
trEMBLtr|M7YF50|M7YF50_TRIUA3.00E-54Uncharacterized protein {ECO:0000313|EnsemblPlants:TRIUR3_02926-P1}
TAIRAT5G551403.00E-23ribosomal protein L30 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000013612408601241626+
Transcript Sequence

Network for GWHGAAEX003291

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00327.19Ribosomal_L3022717.20E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02907RP-L30, MRPL30, rpmD Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0015934Cellular Componentlarge ribosomal subunit

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms25.590
SRR2545915Juvenile tuber20.910
SRP108465SRR5643513five period of Gastrodia elata45.650
SRR5643514five period of Gastrodia elata47.480
SRR5643515five period of Gastrodia elata41.060
SRR5643524five period of Gastrodia elata43.950
SRR5643525five period of Gastrodia elata56.830
SRR5643528five period of Gastrodia elata47.820
SRR5643658five period of Gastrodia elata35.260
SRR5643659five period of Gastrodia elata49.220
SRR5643660five period of Gastrodia elata51.970
SRR5643661five period of Gastrodia elata54.130
SRR5643662five period of Gastrodia elata51.170
SRR5643663five period of Gastrodia elata46.640
SRR5643664five period of Gastrodia elata51.770
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_151.030
SRR6049655Rhizomagastrodiae_C368-T10_good_148.450
SRR6049656Rhizomagastrodiae_C368-T07_good_156.390
SRR6049657Rhizomagastrodiae_C368-T07_good_149.800
SRR6049658Rhizomagastrodiae_C368-T04_good_148.780
SRR6049659Rhizomagastrodiae_C368-T04_good_147.790
SRR6049660Rhizomagastrodiae_C368-T01_good_154.070
SRR6049661Rhizomagastrodiae_C368-T04_good_151.840
SRR6049662Rhizomagastrodiae_C368-T01_good_166.630
SRR6049663Rhizomagastrodiae_C368-T01_good_156.710
SRR6049664Rhizomagastrodiae_C368-T10_good_165.680
SRR6049665Rhizomagastrodiae_C368-T10_good_165.680
SRP279888GastroGastrodia elata tuber 70.32
JuvenJuvenile tuber68.82
Mother_GastroMother tuber of Gastrodia elata 42.92
Mother_JuvenMother tuber of Juvenile 66.69