Detail information of GWHGAAEX003293/evm.TU.scaffold_131.35
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|15807986|ref|NP_285649.1| | 3.00E-19 | chalcone synthase [Deinococcus radiodurans R1] |
| nr | gi|672136814|ref|XP_008792115.1| | 0 | PREDICTED: 3-ketoacyl-CoA synthase 11-like [Phoenix dactylifera] |
| Swissprot | tr|O48780|KCS11_ARATH | 0 | 3-ketoacyl-CoA synthase 11 |
| trEMBL | tr|A0A061GNG8|A0A061GNG8_THECC | 0 | 3-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417} |
| TAIR | AT2G26640 | 0 | 3-ketoacyl-CoA synthase 11 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000136 | 1550770 | 1553477 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003293
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module13 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08392.11 | FAE1_CUT1_RppA | 95 | 383 | 7.20E-145 |
| PF08541.9 | ACP_syn_III_C | 400 | 480 | 2.80E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K15397 | KCS | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Fatty acid elongation | map00062 | ||
| Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006633 | Biological Process | fatty acid biosynthetic process |
| GO:0016747 | Molecular Function | transferase activity, transferring acyl groups other than amino-acyl groups |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 129.710 |
| SRR2545915 | Juvenile tuber | 153.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 60.180 |
| SRR5643514 | five period of Gastrodia elata | 37.900 | |
| SRR5643515 | five period of Gastrodia elata | 96.200 | |
| SRR5643524 | five period of Gastrodia elata | 30.160 | |
| SRR5643525 | five period of Gastrodia elata | 216.570 | |
| SRR5643528 | five period of Gastrodia elata | 200.950 | |
| SRR5643658 | five period of Gastrodia elata | 112.240 | |
| SRR5643659 | five period of Gastrodia elata | 147.000 | |
| SRR5643660 | five period of Gastrodia elata | 70.970 | |
| SRR5643661 | five period of Gastrodia elata | 127.870 | |
| SRR5643662 | five period of Gastrodia elata | 184.630 | |
| SRR5643663 | five period of Gastrodia elata | 123.120 | |
| SRR5643664 | five period of Gastrodia elata | 504.870 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 263.520 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 214.890 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 173.010 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 224.950 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 128.300 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 140.110 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 249.810 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 157.560 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 91.130 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 169.350 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 122.990 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 122.990 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 47.13 |
| Juven | Juvenile tuber | 11.02 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 112.89 | |
| Mother_Juven | Mother tuber of Juvenile | 33.94 |