Detail information of GWHGAAEX003295/evm.TU.scaffold_131.37
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189501771|ref|YP_001957488.1| | 3.00E-08 | hypothetical protein Aasi_0325 [Candidatus Amoebophilus asiaticus 5a2] |
| KOG | KOG1421 | 0 | Predicted signaling-associated protein (contains a PDZ domain) |
| nr | gi|743869659|ref|XP_010905864.1| | 0 | PREDICTED: protease Do-like 7 [Elaeis guineensis] |
| Swissprot | tr|Q8RY22|DEGP7_ARATH | 0 | Protease Do-like 7 |
| trEMBL | tr|M0T5J3|M0T5J3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P09440_001} |
| TAIR | AT3G03390 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000136 | 1628028 | 1754655 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003295
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13365.5 | Trypsin_2 | 18 | 102 | 1.30E-06 |
| PF00595.23 | PDZ | 173 | 223 | 8.70E-07 |
| PF12812.6 | PDZ_1 | 256 | 328 | 6.60E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0004252 | Molecular Function | serine-type endopeptidase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 14.820 |
| SRR2545915 | Juvenile tuber | 27.420 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 31.220 |
| SRR5643514 | five period of Gastrodia elata | 27.040 | |
| SRR5643515 | five period of Gastrodia elata | 29.320 | |
| SRR5643524 | five period of Gastrodia elata | 29.320 | |
| SRR5643525 | five period of Gastrodia elata | 14.510 | |
| SRR5643528 | five period of Gastrodia elata | 12.580 | |
| SRR5643658 | five period of Gastrodia elata | 16.160 | |
| SRR5643659 | five period of Gastrodia elata | 74.380 | |
| SRR5643660 | five period of Gastrodia elata | 93.860 | |
| SRR5643661 | five period of Gastrodia elata | 51.650 | |
| SRR5643662 | five period of Gastrodia elata | 71.370 | |
| SRR5643663 | five period of Gastrodia elata | 84.850 | |
| SRR5643664 | five period of Gastrodia elata | 79.450 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 27.300 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 23.040 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.690 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 26.960 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 28.030 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 30.050 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 27.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 30.570 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 21.890 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 23.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 23.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 81.54 |
| Juven | Juvenile tuber | 76.86 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 74.39 | |
| Mother_Juven | Mother tuber of Juvenile | 71.83 |