Detail information of GWHGAAEX003296/evm.TU.scaffold_131.38
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|108757924|ref|YP_632631.1| | 0 | valyl-tRNA synthetase [Myxococcus xanthus DK 1622] |
| KOG | KOG0432 | 0 | Valyl-tRNA synthetase |
| nr | gi|672142480|ref|XP_008795095.1| | 0 | PREDICTED: valine--tRNA ligase [Phoenix dactylifera] |
| Swissprot | tr|P93736|SYV_ARATH | 0 | Valine--tRNA ligase |
| trEMBL | tr|M0U6V5|M0U6V5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP06440_001} |
| TAIR | AT1G14610 | 0 | valyl-tRNA synthetase / valine--tRNA ligase (VALRS) |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000136 | 1822927 | 1854339 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003296
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00133.21 | tRNA-synt_1 | 137 | 759 | 3.10E-201 |
| PF08264.12 | Anticodon_1 | 805 | 944 | 1.60E-35 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01873 | VARS, valS | Aminoacyl-tRNA biosynthesis | map00970 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006418 | Biological Process | tRNA aminoacylation for protein translation |
| GO:0006438 | Biological Process | valyl-tRNA aminoacylation |
| GO:0004832 | Molecular Function | valine-tRNA ligase activity |
| GO:0002161 | Molecular Function | aminoacyl-tRNA editing activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0004812 | Molecular Function | aminoacyl-tRNA ligase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 95.910 |
| SRR2545915 | Juvenile tuber | 122.130 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 86.260 |
| SRR5643514 | five period of Gastrodia elata | 93.370 | |
| SRR5643515 | five period of Gastrodia elata | 82.490 | |
| SRR5643524 | five period of Gastrodia elata | 90.940 | |
| SRR5643525 | five period of Gastrodia elata | 50.010 | |
| SRR5643528 | five period of Gastrodia elata | 49.590 | |
| SRR5643658 | five period of Gastrodia elata | 62.670 | |
| SRR5643659 | five period of Gastrodia elata | 83.670 | |
| SRR5643660 | five period of Gastrodia elata | 91.220 | |
| SRR5643661 | five period of Gastrodia elata | 79.770 | |
| SRR5643662 | five period of Gastrodia elata | 85.570 | |
| SRR5643663 | five period of Gastrodia elata | 99.590 | |
| SRR5643664 | five period of Gastrodia elata | 92.360 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 80.590 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 88.490 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 85.960 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 75.360 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 65.860 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 65.260 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 71.440 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 70.640 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 89.360 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 86.110 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 95.520 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 95.520 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 111.34 |
| Juven | Juvenile tuber | 131.48 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 103.24 | |
| Mother_Juven | Mother tuber of Juvenile | 142.94 |