Gene detail

Detail information of GWHGAAEX003300/evm.TU.scaffold_131.42

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|22299445\|ref\|NP_682692.1\|	5.00E-41	endo-1,4-beta-xylanase [Thermosynechococcus elongatus BP-1]
nr	gi\|567217356\|ref\|XP_006412307.1\|	4.14E-161	hypothetical protein EUTSA_v10027468mg, partial [Eutrema salsugineum]
trEMBL	tr\|V4LT23\|V4LT23_EUTSA	2.00E-161	Uncharacterized protein {ECO:0000313\|EMBL:ESQ53760.1} (Fragment)
TAIR	AT4G33840	9.00E-154	Glycosyl hydrolase family 10 protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000136	2272668	2288637	+

Transcript Sequence
>GWHTAAEX003300 TTGGGATATTGTCAATTAGGGAAATCAGGATTCAAACTTCAGTGATCAAAGTTGGATTAATTCTGTAATAGATTCACCATGTTAATTGGTTGAGTATGTTGACCTAGGAGGCTCTTAGATACCGTGTAGAAAGAAATACAAAAAGGCGAAAGAATTTATTTTATGTCTGAATTTGCCTATCTATATTATAGAGTATTTCAATTTTATATTATAAAATTTACAACCAATTCCCTAGATTATGCATTTTAGTGGGACAGATCAACGAGTTGAAGGTGGGAAGTAATATATGGAAACCGGAGAGTTGCAAATCACCACACTGCAGAAGCAAGGAAATGCATACTGAATGCTTTAGTGAATCTGCTCCCAACACAGAAAATGATGCCTGTAACGATAAGGAAAATAGTACTATACTCACTGGGGATGATAAGAGAGAAAGGCAAAAGATTGTGGCTGAGGGGAACAGCTTTAATGTGGAGAACAACATTACAGAAACTTGTTGGCCATCATGCGGCAGTGCTGCAGCTGTTGATGATGCTTTCTCTCAAGAATTTGCTATTGCTTCTAATTGTTCGGTCCCAGCATTTAATCAATTTGTATCTGATCACCCATGCGCTAATCCAGAAGATGGTGGCCATTCCAATAATCAAAATTCGAATTACAATGATCTGCTTAAACAATACTATGAACTTGAACAGAGGAAAGAAAGGATTGTGGAGCTACTTTGGCAGTCAAATAACTGGAACTCTGAAACTCCAGTTCAGTGCCCTACTAGTTTACAACAGCAGCTCCCTTGGGGTTACGCTTCTGAAATTGGTCCAAATACCACATGTCCTTGGTGCTCATGCCAGTGTTTATCTTCCTTCTTGAACTCAATATCTAAATGTCCCCCGGCCATCACACTTTCTTCAGGATACGCTTGTTATCCACAACAGATTTTGTGCTCTTCTGACTCCCAAGTCCAGCGAGTTACAGGAGGTGCTCGTTGCTCCACTGATTGCAGCAAGTGCTCAGTGGTAACCCCTTTTTTCAATCATTTGGTTAAAGGAGATGGAAAATCTGTTGAAGCTGAAGTTGTACCTGTGGAAGTGGCTAGAAATTCTGCTAAGGAAGACATAAAAAGGACCTTTGACTTCAGTGAAGGAAAGATAAACTGCGGAGACGATGAATTAGGCAAAGAACTCTCGAGTGACAGCAGCACAAAGACTAATCTTACAAGCGTCGTAAACGCGTGGTACTGGGCGGGCTATCACACTGGCAGGCAAGAAGAAAATCTCTTATCTTACTACTGCGCTTTTGAATCTTTTAGCAATGCGACAGAGTCAAAGGTATGGGTGGACAGCGTCTCCCTGCAGCCGTTCACCACCGAGGAATGGAGGTCTCACCAGTCCCGATCCATCCGGAGGTCCCGAACGAAGCCTGTGCGGATGAAGGCGGTATACGCCGCCGACGGCAGCGCCCTCCCGAACGCCACTGTTTCCATCAAGCTCCAGCGCCGCGGCTTCCCCTTTGGCTGCGCCGTCGCGCAGACCATCCTCACGAACCCCGCCTACCAGCGCTGGTTCGCCTCGCGGGGCTTCACCGTCACCACGTTCGACAACGAGATGAAGTGGTACAGCACGGAGTGGTCCCGCTGGAAAGAGGACTACCGTGCGGCGGACGCGATGCTGGCGTTCGCGAAGCAGCACCGCGTCGCCGTGCGGGGTCACAACATATTCTGGGACGACCCGAGGTACCAGCCGCAGTGGGTCCCGTCGCTCTCCGACGCGCAGCTCAAGGAGGCGACGGCTAGGCGGCTGGCCTCCGTCGTCTCCAGGTACAAGGGCCAGCTTGTTGCGTGGGACGTCGTCAACGAGAACCTCCACTTCAACTTCTTCGAGCAGAGGCTGGGGCCGAGGTTCTCCGCGGACGCGTTCGCGGCGGCGGGCCGGATCGACCCCGGCACCCCCCTCTTCCTCAACGAGTTCAACACGCTGGAGCAGCCGGGGGACGCCGCGGCCGCCCCCGACAAGTATCTCAAGAAGCTGAGGGAGATCCGGAGCTACACCAAGGGCGGTGTGAGGATGGCCATCGGGTTGGAATCCCACTTCAGCCAGCCCAACATCCCCTACATGAGGGCGGCGCTCGATAAGCTCGCGACGGCGAATGTGCCCATCTGGCTCACCGAGGTGGATGTGTACCAGGGACCCAACCAGGCGCAGTATCTGGAGGCGATACTGAGGGAGGGCTTCGCGCATCCGGCGGTTCAGGGGATCGTCGTGTGGGGTGGGTGGCGGCCGGAGGGCTGCAGCAGGATGTGCCTCACCGACAACAGCTTCAAGAATTTGCCCGCTGGAGATGTGGTCGACGGGCTGCTCAAGGAGTGGGGCGCCGGCGGTATCCTGACGGCCGACGAGAGCGGGTTTCTCGAGGTGCCGCTCTTCCACGGGGAGTACAGCGTTGATGTGGTCGGGTCCCCCGCGGCCGGCCGTGTGATCGTCGTCGACAATCAGCAGGAGACGGCCTCCGAACCTGAAGACGGCGCCGCGCGGGTGGTGGTTGTGCGGAGAACTCTTGCGTAG

Network for GWHGAAEX003300

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00331.19	Glyco_hydro_10	388	644	1.30E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.000
SRP064423	SRR2545915	Juvenile tuber	13.350
SRP108465	SRR5643513	five period of Gastrodia elata	11.180
	SRR5643514	five period of Gastrodia elata	8.220
	SRR5643515	five period of Gastrodia elata	8.690
	SRR5643524	five period of Gastrodia elata	8.480
	SRR5643525	five period of Gastrodia elata	8.630
	SRR5643528	five period of Gastrodia elata	9.280
	SRR5643658	five period of Gastrodia elata	8.710
	SRR5643659	five period of Gastrodia elata	9.160
	SRR5643660	five period of Gastrodia elata	11.770
	SRR5643661	five period of Gastrodia elata	10.180
	SRR5643662	five period of Gastrodia elata	8.760
	SRR5643663	five period of Gastrodia elata	7.970
	SRR5643664	five period of Gastrodia elata	8.050
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.000
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.550
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.860
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.070
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.290
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.700
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.340
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.320
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.560
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.100
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.120
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.120
SRP279888	Gastro	Gastrodia elata tuber	10.64
	Juven	Juvenile tuber	16.89
	Mother_Gastro	Mother tuber of Gastrodia elata	8.50
	Mother_Juven	Mother tuber of Juvenile	12.53