Detail information of GWHGAAEX003311/evm.TU.scaffold_1316.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG02506.00E-93DNA repair protein RAD18 (SMC family protein)
nrgi|672165817|ref|XP_008802823.1|1.59E-150PREDICTED: structural maintenance of chromosomes protein 6B [Phoenix dactylifera]
Swissprottr|Q9FII7|SMC6B_ARATH2.00E-93Structural maintenance of chromosomes protein 6B
trEMBLtr|D7U753|D7U753_VITVI3.00E-128Putative uncharacterized protein {ECO:0000313|EMBL:CBI38567.3}
TAIRAT5G614606.00E-93P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000130810386577-
Transcript Sequence

Network for GWHGAAEX003311

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms18.300
SRR2545915Juvenile tuber13.390
SRP108465SRR5643513five period of Gastrodia elata8.460
SRR5643514five period of Gastrodia elata11.290
SRR5643515five period of Gastrodia elata9.150
SRR5643524five period of Gastrodia elata11.940
SRR5643525five period of Gastrodia elata14.620
SRR5643528five period of Gastrodia elata11.130
SRR5643658five period of Gastrodia elata14.070
SRR5643659five period of Gastrodia elata8.550
SRR5643660five period of Gastrodia elata9.180
SRR5643661five period of Gastrodia elata9.520
SRR5643662five period of Gastrodia elata9.600
SRR5643663five period of Gastrodia elata8.780
SRR5643664five period of Gastrodia elata7.670
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.120
SRR6049655Rhizomagastrodiae_C368-T10_good_113.280
SRR6049656Rhizomagastrodiae_C368-T07_good_112.460
SRR6049657Rhizomagastrodiae_C368-T07_good_115.810
SRR6049658Rhizomagastrodiae_C368-T04_good_117.210
SRR6049659Rhizomagastrodiae_C368-T04_good_123.610
SRR6049660Rhizomagastrodiae_C368-T01_good_115.800
SRR6049661Rhizomagastrodiae_C368-T04_good_115.210
SRR6049662Rhizomagastrodiae_C368-T01_good_111.820
SRR6049663Rhizomagastrodiae_C368-T01_good_115.280
SRR6049664Rhizomagastrodiae_C368-T10_good_19.420
SRR6049665Rhizomagastrodiae_C368-T10_good_19.420
SRP279888GastroGastrodia elata tuber 13.92
JuvenJuvenile tuber12.75
Mother_GastroMother tuber of Gastrodia elata 13.50
Mother_JuvenMother tuber of Juvenile 13.98