Detail information of GWHGAAEX003315/evm.TU.scaffold_132.11


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|392410457|ref|YP_006447064.1|7.00E-23arabinose efflux permease family protein [Desulfomonile tiedjei DSM 6799]
KOGKOG02550Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily)
nrgi|672173325|ref|XP_008806791.1|0PREDICTED: organic cation/carnitine transporter 4-like [Phoenix dactylifera]
Swissprottr|Q9LHQ6|OCT4_ARATH0Organic cation/carnitine transporter 4
trEMBLtr|K3Y6L2|K3Y6L2_SETIT0Uncharacterized protein {ECO:0000313|EnsemblPlants:Si009853m}
TAIRAT3G206600organic cation/carnitine transporter4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000012710253281028700+
Transcript Sequence

Network for GWHGAAEX003315

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00083.23Sugar_tr394876.70E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055085Biological Processtransmembrane transport
GO:0022857Molecular Functiontransmembrane transporter activity
GO:0016021Cellular Componentintegral component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.240
SRR2545915Juvenile tuber2.350
SRP108465SRR5643513five period of Gastrodia elata11.700
SRR5643514five period of Gastrodia elata11.760
SRR5643515five period of Gastrodia elata6.700
SRR5643524five period of Gastrodia elata8.130
SRR5643525five period of Gastrodia elata0.270
SRR5643528five period of Gastrodia elata0.200
SRR5643658five period of Gastrodia elata0.310
SRR5643659five period of Gastrodia elata6.880
SRR5643660five period of Gastrodia elata4.740
SRR5643661five period of Gastrodia elata5.790
SRR5643662five period of Gastrodia elata11.630
SRR5643663five period of Gastrodia elata11.300
SRR5643664five period of Gastrodia elata10.010
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.190
SRR6049655Rhizomagastrodiae_C368-T10_good_121.040
SRR6049656Rhizomagastrodiae_C368-T07_good_18.910
SRR6049657Rhizomagastrodiae_C368-T07_good_16.770
SRR6049658Rhizomagastrodiae_C368-T04_good_13.000
SRR6049659Rhizomagastrodiae_C368-T04_good_12.030
SRR6049660Rhizomagastrodiae_C368-T01_good_12.580
SRR6049661Rhizomagastrodiae_C368-T04_good_18.050
SRR6049662Rhizomagastrodiae_C368-T01_good_18.600
SRR6049663Rhizomagastrodiae_C368-T01_good_14.720
SRR6049664Rhizomagastrodiae_C368-T10_good_125.840
SRR6049665Rhizomagastrodiae_C368-T10_good_125.840
SRP279888GastroGastrodia elata tuber 5.21
JuvenJuvenile tuber0.72
Mother_GastroMother tuber of Gastrodia elata 0.17
Mother_JuvenMother tuber of Juvenile 0.42