Gene detail

Detail information of GWHGAAEX003319/evm.TU.scaffold_132.18

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428316794\|ref\|YP_007114676.1\|	2.00E-10	(Myosin heavy-chain) kinase [Oscillatoria nigro-viridis PCC 7112]
KOG	KOG1034	0	Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily
nr	gi\|695030280\|ref\|XP_009402595.1\|	0	PREDICTED: polycomb group protein FIE2 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q8VZY6\|FIE2_MAIZE	0	Polycomb group protein FIE2
trEMBL	tr\|M0T1W2\|M0T1W2_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P26370_001}
TAIR	AT3G20740	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000127	1158590	1184780	-

Transcript Sequence
>GWHTAAEX003319 GCAGTACAAAAAATGAAAAAAAAAATGTAAATGTTAGTTCTTTTCAAACTTGAACGGAAGCTGTAACAAAAAAAACGTGAAGGTAGGGAAGGATGGCGAAGCCTGGGCTGGGCTGTGAACCTGCAGTTGGCTCGTTGACGCCGTTCAAGAAGAGGGAGTACAGAGTCAGCAACCGATTGCACGAGGGCAAGCGTCCCCTTTACGCCATCGCCTTCAACTTCCTCGACTCACAATACTACGATGTCTTCGCTACCGTCGGCGGTAATCGAGTGACCGTATATCGATGCCTTGAAGGGGGGCTGGTCGCTGTGCTGCAAGCTTACTTTGATGAAGATAAGGATGAGTCTTTCTATACTTTGAGTTGGGCATGTGATATGGATGGAACTCCATTTATAGTGGCAGGCGGAAGCAATGGTATAATCCGTGTGATTAATGCTGGATCAGAGAAGATTCATATGAGTTTCGTTGGTCATGGGGATTCAGTAAATGAGTTACGAACTCAATCACTGAAGCCTTCTCTTGTGGTGTCTGCTAGCAAGGATGAATCCGTGCGACTGTGGAATATACATACTGGGATTTGCATTCTAATTTTTGCGGGGGCTGGTGGTCACCGTAATGAAGTTTTAAGTGTTGATTTTCATCCATCTGATATTTACCGCATTGCAAGTTGTGGCATGGACAACACTGTTAAAATTTGGTCAATGAAAGAGTTTTGGCAGTATGTTGAAAGGTCCTTTACATGGACTGATCTCCCATCAAAATTTCCTACCAAATATGTGCAATTTCCTATTTTTATAGCTTCAGTGCACTCCAACTATGTAGATTGCAATAGATGGCTTGGTGATTTTATTTTATCAAAGAGTGTGGACAATGAAATTGTCCTTTGGGAGCCAAAGATTAAGGAACAGAGTCCAGGAGAGGGAGCTGTTGATGTTCTGCAAAAGTACCCTGTACCCGAATGTGATATCTGGTTCATCAAGTTCTCATGCGACTTCCATTATAATACTGCAGTAATTGGGAATAGGGAAGGTAAAATTTTTGTTTGGGAACTACAAACCAGCCCACCTGTTCTCACTGCAAGGCTTTCTCATGTTCATTGTAAATCTCCAATCAGGCAGACAGCCGTATCCTTCGATGGAAGCACAATTCTAAGTTGTTGTGAGGATGGATCTATCTGGCGCTGGGATGCAGTGCAATGAAGCTACATGTTGGTCAAAATTTTGATAGAAAATCTCTATCTTCTTGCAGTTTATTCTTATTACGCATGTCACTATAATCATTACACATATAATTTAAAAAATTATAGTCTAAACTCTGTTATTGACACGTCACTTAAATTCTCTAAGACATCATAACCTTTTACTAAAACCTACCGTTACATCACGTGAAAATTAGGACTTGTGGCTGCTGGAGCAGCAGCAGCACAAGGAAGCTTTTCTTTCTCTTTTTGTTTCTCCTTGATGAGTGTTTTCCTCTTCCTTGTTAGGGGCTAGTTCTTATGTATTTTAAATATATAGGTATGTGTGTAAATAAACAATTTGAAGCATTCGATAAATGTATCATGAAACTTTTATATTATTTGCAACATGTGTTAAAACCATTTACTTGAACTATCAGAACAGGTTGACAAGAG

Network for GWHGAAEX003319

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	123	157	0.027
PF00400.31	WD40	171	203	3.70E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	40.900
SRP064423	SRR2545915	Juvenile tuber	48.820
SRP108465	SRR5643513	five period of Gastrodia elata	44.670
	SRR5643514	five period of Gastrodia elata	48.520
	SRR5643515	five period of Gastrodia elata	41.320
	SRR5643524	five period of Gastrodia elata	49.780
	SRR5643525	five period of Gastrodia elata	46.170
	SRR5643528	five period of Gastrodia elata	41.020
	SRR5643658	five period of Gastrodia elata	40.050
	SRR5643659	five period of Gastrodia elata	41.630
	SRR5643660	five period of Gastrodia elata	37.350
	SRR5643661	five period of Gastrodia elata	40.480
	SRR5643662	five period of Gastrodia elata	40.270
	SRR5643663	five period of Gastrodia elata	42.640
	SRR5643664	five period of Gastrodia elata	40.090
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	36.650
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	32.830
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	33.580
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	31.640
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	28.500
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	26.920
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	27.450
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	25.590
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	31.060
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	33.700
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	44.540
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	44.540
SRP279888	Gastro	Gastrodia elata tuber	41.84
	Juven	Juvenile tuber	56.80
	Mother_Gastro	Mother tuber of Gastrodia elata	37.22
	Mother_Juven	Mother tuber of Juvenile	46.76