Gene detail

Detail information of GWHGAAEX003323/evm.TU.scaffold_132.30

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0656	3.00E-72	G1/S-specific cyclin D
nr	gi\|672181581\|ref\|XP_008811014.1\|	7.82E-147	PREDICTED: cyclin-D4-1-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q69QB8\|CCD31_ORYSJ	1.00E-102	Cyclin-D3-1
trEMBL	tr\|M0RJJ8\|M0RJJ8_MUSAM	6.00E-138	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P19230_001}
TAIR	AT2G22490	3.00E-72	Cyclin D2;1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000127	2427890	2430612	-

Transcript Sequence
>GWHTAAEX003323 ATTTAGTTGCCCTAATGCTCTCTCTATCCTTCTACAACTCTACAACATTATAATCTCTTATCTTCCATCTCCATTCTCCTTTACCATCTCAGAGAGCATACACCAAATGGGAAAGCTTTCTCTTTCGAGTTCTTCATGACAGGTGACAACACTTCAGGAGTAGCAAGGGGAAGAGAGCTCATCTCTCTCACTAACACTCACGGAGCTCTGATCTAACTGTAATGGGGGTTATTTACGACTGTGGTTCTTCACTACTACTATGCTCCGAGGACAACAAGAGCATCCTGGATTTTGATGATGAGGAGGAGCTTGGCATCACTGGTAGATTTCAGGATAGTGAACTAGGGAAGATTTATGATCAAAAGACTGCCTTTTTCCCAGATTTCTTCATGATTTTCCCATTACAGTCCGATGATTGCTTCTTTTTGTTGATGGAGAAAGAATCTGAACATCTCCCTGTAAAAGATTATGCTACAAGGTTAATGAGCGGAGCATTGGACATGTCCTTGAGAAACGATGCTGTTGACTGGATTAGGAAGGTTCATGCTTATTACAGCTTTGGACCTCTAAGTGCCTACTTATCAGTAAACTATCTAGATCGGTTTCTTTCTGCATATGAACTCCCTCAAGGGAAAGCTTGGATGACCCAATTGCTGGCTGTGGCATGTTTATCATTGGCTGCAAAGATGGATGAAACTGAAGTTCCTTTATCTCTGGATTTACAGATAGCAAATGCCAAATATATATTTGAGGCAAAAACCATACAAAGAATGGAACTTTTGGTGTTGAGCACTCTCAAATGGCGGATGCTTCCAGTGACACCATTCTCATTCATAGACTATTTTCTCATTAAGTTTAATGATGGGAATTCCCCGGAAGAATTTGAGGTTCGTCGTTGTGTTGATCTCATCCTGAGTACAATTAGAGGCATTGACATATTAGAATTCCGGCATTCAGAGGTGGCTGCTGCAGTTGCATTGATTGCATTGGGCTGTAATGAGAACGCAGACATTCAGAGAGCTCTGATATGTTGCAACTATGTTAAGGAGGAAAGAGTGATGCAGTGCTATGAAGCAATACAAGATATTAGACCACTGGATGGAAACACTCCTACAGTTCTCTCAATGCCACAGAGCCCAATTGGGGTATTGGATGCCAAATGCTTGAGCTATAAGAGTGATGAAACTGCAGCTTCTTCACAGGAAAACTCTCTTAATAATTCTCTAGCAGCAAAGAAGAGGAAGCTGAACAGCTCATCGGAAACATAGTTGAGAAGATTTCTCACTGCTTTGCAGAGGAATAAGTACTTTGGAGCACTTTCTTCTTTGGGTATTGGGAGTTGTTGAATTGGCCATATTTATTGTAGAGAGTACACGACATTTTATGGAGGCATAACTACTTTTGTGCTCTCTCCTGTTTAGTTGCTGAGCTTTTTTGTATTGGGTCAGGAACATGCAAAGAATTGGACTGGTTGAGGAAGTGTAACACTAAGGCAGAGCAAACAACAAAATAAAAAAAAGAGGAGTGGAGGTAAGAAATAAGTATATATATCATGCTTTTTTATCATATTATAAAATGGATATTATTATAAAATGCATAAATAAAGGAGATAACAAAGGAAGACAAGCAATGCAGCTATCATATATGACCATATTATCAGTTTTGATAAAACTGAAGATGGTAGAAATTGTAGCATTTATGAAACAGATAATTTGTATGCCAACTATATGAAATTTCTGTATTAATAAAGCTGATATGTTATTTTGTAGAA

Network for GWHGAAEX003323

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00134.22	Cyclin_N	70	196	2.70E-28
PF02984.18	Cyclin_C	199	289	2.50E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	33.930
SRP064423	SRR2545915	Juvenile tuber	61.350
SRP108465	SRR5643513	five period of Gastrodia elata	25.910
	SRR5643514	five period of Gastrodia elata	24.670
	SRR5643515	five period of Gastrodia elata	19.600
	SRR5643524	five period of Gastrodia elata	21.950
	SRR5643525	five period of Gastrodia elata	16.660
	SRR5643528	five period of Gastrodia elata	12.770
	SRR5643658	five period of Gastrodia elata	16.310
	SRR5643659	five period of Gastrodia elata	32.680
	SRR5643660	five period of Gastrodia elata	32.130
	SRR5643661	five period of Gastrodia elata	31.710
	SRR5643662	five period of Gastrodia elata	27.420
	SRR5643663	five period of Gastrodia elata	29.990
	SRR5643664	five period of Gastrodia elata	24.040
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	25.020
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.030
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	30.040
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	22.310
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	19.440
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.310
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	24.620
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	22.830
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	28.760
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.950
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	29.020
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	29.020
SRP279888	Gastro	Gastrodia elata tuber	24.83
	Juven	Juvenile tuber	26.24
	Mother_Gastro	Mother tuber of Gastrodia elata	4.35
	Mother_Juven	Mother tuber of Juvenile	9.63