Detail information of GWHGAAEX003324/evm.TU.scaffold_132.34


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|83313165|ref|YP_423429.1|7.00E-2550S ribosomal protein L19 [Magnetospirillum magneticum AMB-1]
KOGKOG16981.00E-68Mitochondrial/chloroplast ribosomal protein L19
nrgi|743890725|ref|XP_010911152.1|1.44E-75PREDICTED: 50S ribosomal protein L19, chloroplastic-like, partial [Elaeis guineensis]
Swissprottr|P82413|RK19_SPIOL2.00E-3950S ribosomal protein L19, chloroplastic (Precursor)
trEMBLtr|M0SSL4|M0SSL4_MUSAM8.00E-73Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P27520_001}
TAIRAT5G117501.00E-68Ribosomal protein L19 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000012726340572656767+
Transcript Sequence

Network for GWHGAAEX003324

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01245.19Ribosomal_L191412362.30E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02884RP-L19, MRPL19, rplS Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms30.710
SRR2545915Juvenile tuber26.320
SRP108465SRR5643513five period of Gastrodia elata25.720
SRR5643514five period of Gastrodia elata24.730
SRR5643515five period of Gastrodia elata26.900
SRR5643524five period of Gastrodia elata23.360
SRR5643525five period of Gastrodia elata23.870
SRR5643528five period of Gastrodia elata21.820
SRR5643658five period of Gastrodia elata15.650
SRR5643659five period of Gastrodia elata31.050
SRR5643660five period of Gastrodia elata26.620
SRR5643661five period of Gastrodia elata25.840
SRR5643662five period of Gastrodia elata28.710
SRR5643663five period of Gastrodia elata28.970
SRR5643664five period of Gastrodia elata24.760
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_121.020
SRR6049655Rhizomagastrodiae_C368-T10_good_131.230
SRR6049656Rhizomagastrodiae_C368-T07_good_124.060
SRR6049657Rhizomagastrodiae_C368-T07_good_120.490
SRR6049658Rhizomagastrodiae_C368-T04_good_122.330
SRR6049659Rhizomagastrodiae_C368-T04_good_122.500
SRR6049660Rhizomagastrodiae_C368-T01_good_121.670
SRR6049661Rhizomagastrodiae_C368-T04_good_119.890
SRR6049662Rhizomagastrodiae_C368-T01_good_125.440
SRR6049663Rhizomagastrodiae_C368-T01_good_125.840
SRR6049664Rhizomagastrodiae_C368-T10_good_125.530
SRR6049665Rhizomagastrodiae_C368-T10_good_125.530
SRP279888GastroGastrodia elata tuber 25.61
JuvenJuvenile tuber16.00
Mother_GastroMother tuber of Gastrodia elata 15.83
Mother_JuvenMother tuber of Juvenile 13.43