Detail information of GWHGAAEX003329/evm.TU.scaffold_133.9


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|434395012|ref|YP_007129959.1|2.00E-99Iron-regulated ABC transporter ATPase subunit SufC [Gloeocapsa sp. PCC 7428]
nrgi|743843372|ref|XP_010938047.1|2.88E-146PREDICTED: ABC transporter I family member 6, chloroplastic-like [Elaeis guineensis]
Swissprottr|Q9CAF5|AB6I_ARATH7.00E-136ABC transporter I family member 6, chloroplastic (Precursor)
trEMBLtr|W1P995|W1P995_AMBTC1.00E-141Uncharacterized protein {ECO:0000313|EMBL:ERN04239.1}
TAIRAT3G106702.00E-135non-intrinsic ABC protein 7

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000142509577518484-
Transcript Sequence

Network for GWHGAAEX003329

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00005.26ABC_tran962501.90E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0016887Molecular FunctionATPase activity
GO:0005524Molecular FunctionATP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms36.060
SRR2545915Juvenile tuber34.800
SRP108465SRR5643513five period of Gastrodia elata25.200
SRR5643514five period of Gastrodia elata25.480
SRR5643515five period of Gastrodia elata23.980
SRR5643524five period of Gastrodia elata27.980
SRR5643525five period of Gastrodia elata36.750
SRR5643528five period of Gastrodia elata49.360
SRR5643658five period of Gastrodia elata36.120
SRR5643659five period of Gastrodia elata28.700
SRR5643660five period of Gastrodia elata28.740
SRR5643661five period of Gastrodia elata29.250
SRR5643662five period of Gastrodia elata31.530
SRR5643663five period of Gastrodia elata33.810
SRR5643664five period of Gastrodia elata24.990
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_120.160
SRR6049655Rhizomagastrodiae_C368-T10_good_124.450
SRR6049656Rhizomagastrodiae_C368-T07_good_123.170
SRR6049657Rhizomagastrodiae_C368-T07_good_123.000
SRR6049658Rhizomagastrodiae_C368-T04_good_128.260
SRR6049659Rhizomagastrodiae_C368-T04_good_126.920
SRR6049660Rhizomagastrodiae_C368-T01_good_124.870
SRR6049661Rhizomagastrodiae_C368-T04_good_121.650
SRR6049662Rhizomagastrodiae_C368-T01_good_127.910
SRR6049663Rhizomagastrodiae_C368-T01_good_127.420
SRR6049664Rhizomagastrodiae_C368-T10_good_131.070
SRR6049665Rhizomagastrodiae_C368-T10_good_131.070
SRP279888GastroGastrodia elata tuber 49.95
JuvenJuvenile tuber34.83
Mother_GastroMother tuber of Gastrodia elata 36.05
Mother_JuvenMother tuber of Juvenile 40.32