Detail information of GWHGAAEX003333/evm.TU.scaffold_133.14


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428319291|ref|YP_007117173.1|2.00E-83solanesyl diphosphate synthase [Oscillatoria nigro-viridis PCC 7112]
KOGKOG07762.00E-137Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase
nrgi|672128318|ref|XP_008787643.1|0PREDICTED: solanesyl-diphosphate synthase 1, mitochondrial-like isoform X1 [Phoenix dactylifera]
Swissprottr|Q653T6|SPS1_ORYSJ0Solanesyl-diphosphate synthase 1, mitochondrial (Precursor)
trEMBLtr|M0RTD4|M0RTD4_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P18540_001}
TAIRAT2G346302.00E-137geranyl diphosphate synthase 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000142616390673329+
Transcript Sequence

Network for GWHGAAEX003333

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00348.16polyprenyl_synt1063571.00E-67
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14066GPS Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Terpenoid backbone biosynthesismap00900

Gene Ontology

GO term OntologyName
GO:0008299Biological Processisoprenoid biosynthetic process

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms20.640
SRR2545915Juvenile tuber20.860
SRP108465SRR5643513five period of Gastrodia elata16.550
SRR5643514five period of Gastrodia elata17.720
SRR5643515five period of Gastrodia elata16.420
SRR5643524five period of Gastrodia elata19.400
SRR5643525five period of Gastrodia elata15.200
SRR5643528five period of Gastrodia elata26.550
SRR5643658five period of Gastrodia elata15.140
SRR5643659five period of Gastrodia elata15.950
SRR5643660five period of Gastrodia elata16.000
SRR5643661five period of Gastrodia elata13.880
SRR5643662five period of Gastrodia elata12.210
SRR5643663five period of Gastrodia elata14.220
SRR5643664five period of Gastrodia elata11.830
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.570
SRR6049655Rhizomagastrodiae_C368-T10_good_111.830
SRR6049656Rhizomagastrodiae_C368-T07_good_113.710
SRR6049657Rhizomagastrodiae_C368-T07_good_116.090
SRR6049658Rhizomagastrodiae_C368-T04_good_116.610
SRR6049659Rhizomagastrodiae_C368-T04_good_113.440
SRR6049660Rhizomagastrodiae_C368-T01_good_115.860
SRR6049661Rhizomagastrodiae_C368-T04_good_114.340
SRR6049662Rhizomagastrodiae_C368-T01_good_115.300
SRR6049663Rhizomagastrodiae_C368-T01_good_117.950
SRR6049664Rhizomagastrodiae_C368-T10_good_116.390
SRR6049665Rhizomagastrodiae_C368-T10_good_116.390
SRP279888GastroGastrodia elata tuber 21.66
JuvenJuvenile tuber17.70
Mother_GastroMother tuber of Gastrodia elata 18.42
Mother_JuvenMother tuber of Juvenile 17.34