Gene detail

Detail information of GWHGAAEX003339/evm.TU.scaffold_133.23

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|42524005\|ref\|NP_969385.1\|	multidrug ABC transporter permease/ATPase [Bdellovibrio bacteriovorus HD100]
KOG	KOG0054	Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily
nr	gi\|695041327\|ref\|XP_009408267.1\|	PREDICTED: ABC transporter C family member 2-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q42093\|AB2C_ARATH	ABC transporter C family member 2
trEMBL	tr\|K3Y4M9\|K3Y4M9_SETIT	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si009167m}
TAIR	AT2G34660	multidrug resistance-associated protein 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000142	958357	1059453	+

Transcript Sequence
>GWHTAAEX003339 TAGCTTCTCCTTCTCTCGGAACACGATCATCAAAATCTAATTCATACTCGAAATTTTGTTGAGTTCGCATCGAAACTGGAGAAAAAACAATGAGATGAATGATTTTGTGGTATCGACGACTTCGTGTGGAAACAATAAAGCAAAACGATGAACGATTTCGTGCTGTCCTTTATCTCGAAAGGGAGCTCTAGGTGAACTAGAGTATCTTGAATCCAGCAGAAATGGCTTTTGAGCCCTTGATTTGGTATTGTCGGCCGGTGGAGAATGCGAGATGGGCCAAGGTGGTGGAGAATGCCTTCGGCCCTTACACACCCTGTGGCATTGAAACCATTTTGATTGGCATCTCCCATCTCGTTCTATTTGGTTTTTGCTTTTACAGAATATGGATGACAAAGAGAGATCACACAGTTCAGAGATTTCACCTGAGGTCTCCTTATTACAACTATCTTTTAGGTGCTCTGGCTTTGTATTGTGCTGCACAGCCTTTACTCAGGCTGGGAATGGGCATATCAATTGCAAATATTGATGGGCAGTCCGGCCTAGCACCATTTGAGATTGTCTCGTTGGTCGTAGAATCAGTTACATGGTTTTGCGTGCTTGCCATGATTGTCATGGAAACTAACATTTACATTCGTGAATTGCGGTGGTATGTACGGTTCATTGTCATATATGTGCTAGTTGGGGATGCCGCTGGTTACAATGTTCTTCTTTCAGTAATTAAGCACTATAACAAATTGGTATTCTATGTGGTCAGCAGTGATATGATTTGCCAGGTTTTATTTGGCATCTTACTCCTGATATATGTTCCTACTTTAGATCCTTATTCAGGATATAGCCCTGTTGGAGGTGATGTCAGTGAAGAAAAGACAAACTATGAATCACTTCCCGAAGGAGAACTGGTATGCCCTGAGAGGCATGTGAACATAATATCTAAAATATATTTTTCTTGGATGACTCCACTAATGCAACTTGGTTATTCGAGGCCTATCACTGAGAAGGATGTTTGGAAATTAGATTCATGGGATCAGACAGAAACATTATATAGCAGATTCCAGAAATTTTGGTTGGAGGAATCTCAAAGGCCGAAACCTTGGCTGCTGAGAGCAATACATCGTAGCCTTTGGGGCAGATTCTGGCTGGGAGGCTTTTTCAAGATTGGCAATGACGCTTCTCAATTTGTGGGCCCAATAATTTTAAATCTTCTTTTAAAGTCTATGCAAGAAGGAGATCCAGGATGGCATGGCTACATCTATGCCTTCTCAATTTTTGCCGGAGTGTCTTTGGGAGTGCTATGTGAAGCTCAGTACTTTCAAAATGTGATGCGAGTTGGCTTTCGACTCAGATCTACCTTGGTAGCTGCTGTGTTTCGCAAGTCATTGAGACTAACACATGAGGGCCGAAGAAAAATTGCTTCAGGAAAAATAACTAACTTGATGACTACCGATGCAGAAGCACTTCAGCAAATTTGTCAGCAACTTCATAGTTTGTGGTCAGCACCATTTCGGATTGTCATATCCATTGTGCTTCTATATAGCCAGCTAGGCGTTGCCTCACTTGTAGGCTCGTTAATGCTTGTATTTATGTTCCCATTGCAGACATTTGTGATCAGCAAAATGCAGAAATTAACCAAGGCAGGCTTGCAGCGCACTGACAAACGAATTGGTCTTATGAATGAAGTGCTAGCTGCTATGGATACTGTAAAATGCTATGCATGGGAGCAAAGCTTCCAGGGTAAAGTACAAAGCATTCGGAATGATGAGCTTTCGTGGTTTCGCAAAGCTCAATTACTAGCAGCGTTCAACTCGTTTATTCTGAACAGCATTCCAGTTGTTGTTACTGTTGTATCTTTTGGAGTGTACTCTCTGCTTGGAGGTGATCTTACTCCTGCAAAGGCGTTCACATCACTTTCATTGTTTGCTGTATTACGCTTTCCACTGTTCATGTTGCCAAATTTGATCACTCAGGTTGTGAATGCTAACGTTTCATTGAAACGGCTAGAGGAGCTATTCATGACCGAGGAGAGAGTGCTTATGCCTAATCCACCACTTGTTCCTTCTCTTCCAGCCATATCAATCAGGAATGGCTGCTTTTCTTGGGATTCAAAGGAGGAGAGACCCACTTTATCAAATGTCAATTTGGATGTACCTGTTGGTTGCTTGGTTGCCATAGTTGGCAGCACGGGAGAAGGAAAAACTTCTCTTGTATCAGCAATGCTTGGTGAGCTTCCTCCAAAGGCAGGATCCGATACAACCGTTATCATTCGAGGCAGTGTTGCTTATGTTCCACAAATTTCATGGATTTTCAATGCAACTGTACGGGATAACATTTTGTTTGGATCACCTTTTGAAGCACAACACTACCAAGAAACTATTGATGTAACTGCTTTGCAGCATGACCTTGAACTACTTCCTGGAGGCGACTTTACTGAAATTGGTGAACGGGGCGTTAACATCAGTGGAGGACAAAAGCAAAGAGTTTCAATGGCAAGGGCTTTTTATTCCAATTCTGATGTGTATATATTTGATGATCCCTTGAGTGCCCTAGATGCTCACGTTGGCCGGCAGGTTTTTGATAGATGCATTAAGGATAAACTGAGAGGAAAAACCCGAGTGCTTGTAACAAACCAGTTGCACTTCCTTCCTCATGTGGATAGAATTATTGTGGTCCATGAAGGCATGATCAAGGAAGAGGGAACCTTTGAGGAACTCAGTAGAAATGGAGCCCTTTTTCAAAGGCTAATGGAAAATGCGGGGAAGATGGAGGAGCAACTTGATGAGGACGAAGGTGGAAGTCCAAGCCAGGAGGGTATAACTTCTGAAAATAGAAATGCTATAATAGGTGAAGATGAACTCAAAAACAAAACTATGGAAGCAAAGGGAGGGAAATCTGTTCTTATCAAACAGGAGGAACGTGAAACTGGTGTTGTCAACTCTAAAGTTATTCATAGGTATAAAAATGCACTGGGCGGACTCTGGGTTGTTATGATACTCTTTTTTTGTTACGTATTAACTGAAACTTTAAGAGTTTCTAGTAGTACATGGCTAAGCGTTTGGACAGACCAAATCTCTCCAAAAAGTCGTGGAGCTAGTTTTTACAACCTGATTTATGCACTTCTTTCCTTTGGTCAGATACTTGTGACGCTGACTAATTCTTATTGGTTAATTACCTCTAGTCTTTATGCTGCCAAGAGGCTGCATGATGCCATGCTTAGCTCGATATTGCGAGCTCCAATGGTATTCTTTCACACAAACCCACTTGGTAGGATAATAAATAGATTTGCAAAAGATCTGGGTGATATAGATCGCAATGTTGCCGTATTTGTGAATATGTTTTTGGGACAAGTTTCGCAGCTACTTTCAACTTTTATTTTGATAGGCCTCGTCAGTACTACATCTCTTTGGGCCATCATGCCACTTCTGATTTTATTTTTTGCTGCCTACTTGTATTATCAGAGCACAGCACGCGAGGTGAAGCGACTAGATTCAATAACCAGGTCTCCAGTTTATGCACAATTTGGGGAGGCTTTGAATGGATTCTCAACCATACGCGCATATAAAGCATATGATAGAATGGCTCGTATTAACGGGATGTCAATGGATAATAATGTGAGATATACGCTGGCGAATATGAGTGCCAACCGCTGGCTTGCTATAAGGTTAGAAACATTGGGTGGAATCATGATTTGGTTTACAGCGACTTTTGCCGTCATGCAGAACCAGCGTGCTGAAAACCAGAAGGCATTTGCCTCAACAATGGGCCTGCTTCTTTCTTATGCTTTGAATATTACAAGCTTATTGACATCTGTATTAAGACTAGCAAGTCTTGCTGAGAATAGTTTAAATGCTGTGGAGCGAGTTGGAACATACATAGAATTACCTTCTGAGGCTCCTCCAGTTATTGAAAGCAATAGACCTCCTCCTGGTTGGCCCACTTCAGGAATGATTGAATTCCAAGACGTTGTTCTTAGATATAGGCCTGAACTTCCTCCTGTTCTCCATGGCATATCTTTTAGTATTGCGCCAAGTGATAAAATTGGGGTAGTTGGCCGAACTGGTGCTGGAAAGTCTAGTATGCTAAATGCTTTATTCAGGATGGTGGAACTGGAGAGAGGAACAATCTTTGTAGATGGCTGTGATATTGTAAAATTTGGTCTCTTGGATTTGCGCAAGGTTCTTGGAATAATTCCTCAATCTCCTGTTTTGTTTTCAGGAACTGTGCGTTTCAATCTGGATCCTTTCAATGAGCATAATGATGCTGATCTTTGGGAAGCATTGGAAAGAGCTCATCTAAAAGATGCTATCCGTCGGAACTCTGTAGGCCTTGATGCTGAGGTTTCAGAGGCAGGGGAAAATTTCAGTGTTGGGCAGAGGCAACTATTAAGTCTAGCTCGTGCATTACTCCGCAGATCAAAGATATTAGTCCTTGATGAAGCAACTGCGTCAGTGGATGTCCGTACCGATGCCCTTATTCAGAAAACAATTCGAGAAGAGTTCAAGTCCTGTACTATGCTCATCATAGCCCATCGCTTGAATACTATAATCGATTGTGATAAAATCTTATTGCTCCATTCTGGAAAGGTTTTGGAATTTGACACGCCGGAGGATCTTTTATCAAATGACGAAAGTGCTTTCTCCAAAATGGTACAAAGCACCGGAGCAGCTAATGCTGAATACTTGCGGAATTTAGTGCTTACGGAGAAATTCAACAAGGAAGAAAACAAAAATCAAGATCAGCGAAGGAAATGGCTTGCCTCCTCTCGTTGGGCGGTTGCTGCTCAATTAGCACTTGCTGTCAGCCTCACCTCCTCACACAATGATCTGAAATCCCTTCAAACCATGGATGAGAATAGCATCCTCAAGAAAACAAAGGATGCAGTTGTCACTCTTCAGAGCGTTTTGGAAGGAAAGCATGATAAAGAAATTGACGAGTCATTGTATCAGCAACAGTTTCCCAAGGAAAGATGGTGGCCTTCTCTCTATAAAGTCATTGAAGGACTTGCCATGATGAGTAAGCTGTCTCACGGTCGGCTCCAGCATCCGAATTTCTCTTTTGAAGATGAAGACGAGTCGTCCAGATGGGACCAAATTGAAATGCAGCTGTAAGAAGCAGCATTCATTTTTATAATCTTTTTTGCGAATTGGAAGAGGCAAGTTACTACCTTGCATATAATGCTCTACTGACAAGCCCCCAAGGCTGCCTGTGATATCCCATTTTGTCGTTTTTTTCTGAAAGAGTAAAACCTGAATAATTATTTTGCAAATATGACATCCTATGGATGCAGTACTGCATTAGTTTTGTCTACTTTGCATCTCATGGAGCATTTTTTTTCCTAGTGTACCCACTTGAATCTATTGAATGACGTTAATTAAAGTGAAAAGTGATGCAAGT

Network for GWHGAAEX003339

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.22	ABC_membrane	305	572	2.20E-36
PF00005.26	ABC_tran	634	771	6.80E-19
PF00664.22	ABC_membrane	920	1167	3.60E-29
PF00005.26	ABC_tran	1258	1406	2.20E-26

Protein Sequence

>GWHPAAEX003339
MAFEPLIWYCRPVENARWAKVVENAFGPYTPCGIETILIGISHLVLFGFCFYRIWMTKRDHTVQRFHLRSPYYNYLLGALALYCAAQPLLRLGMGISIANIDGQSGLAPFEIVSLVVESVTWFCVLAMIVMETNIYIRELRWYVRFIVIYVLVGDAAGYNVLLSVIKHYNKLVFYVVSSDMICQVLFGILLLIYVPTLDPYSGYSPVGGDVSEEKTNYESLPEGELVCPERHVNIISKIYFSWMTPLMQLGYSRPITEKDVWKLDSWDQTETLYSRFQKFWLEESQRPKPWLLRAIHRSLWGRFWLGGFFKIGNDASQFVGPIILNLLLKSMQEGDPGWHGYIYAFSIFAGVSLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRRKIASGKITNLMTTDAEALQQICQQLHSLWSAPFRIVISIVLLYSQLGVASLVGSLMLVFMFPLQTFVISKMQKLTKAGLQRTDKRIGLMNEVLAAMDTVKCYAWEQSFQGKVQSIRNDELSWFRKAQLLAAFNSFILNSIPVVVTVVSFGVYSLLGGDLTPAKAFTSLSLFAVLRFPLFMLPNLITQVVNANVSLKRLEELFMTEERVLMPNPPLVPSLPAISIRNGCFSWDSKEERPTLSNVNLDVPVGCLVAIVGSTGEGKTSLVSAMLGELPPKAGSDTTVIIRGSVAYVPQISWIFNATVRDNILFGSPFEAQHYQETIDVTALQHDLELLPGGDFTEIGERGVNISGGQKQRVSMARAFYSNSDVYIFDDPLSALDAHVGRQVFDRCIKDKLRGKTRVLVTNQLHFLPHVDRIIVVHEGMIKEEGTFEELSRNGALFQRLMENAGKMEEQLDEDEGGSPSQEGITSENRNAIIGEDELKNKTMEAKGGKSVLIKQEERETGVVNSKVIHRYKNALGGLWVVMILFFCYVLTETLRVSSSTWLSVWTDQISPKSRGASFYNLIYALLSFGQILVTLTNSYWLITSSLYAAKRLHDAMLSSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQVSQLLSTFILIGLVSTTSLWAIMPLLILFFAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGFSTIRAYKAYDRMARINGMSMDNNVRYTLANMSANRWLAIRLETLGGIMIWFTATFAVMQNQRAENQKAFASTMGLLLSYALNITSLLTSVLRLASLAENSLNAVERVGTYIELPSEAPPVIESNRPPPGWPTSGMIEFQDVVLRYRPELPPVLHGISFSIAPSDKIGVVGRTGAGKSSMLNALFRMVELERGTIFVDGCDIVKFGLLDLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDAIRRNSVGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDKILLLHSGKVLEFDTPEDLLSNDESAFSKMVQSTGAANAEYLRNLVLTEKFNKEENKNQDQRRKWLASSRWAVAAQLALAVSLTSSHNDLKSLQTMDENSILKKTKDAVVTLQSVLEGKHDKEIDESLYQQQFPKERWWPSLYKVIEGLAMMSKLSHGRLQHPNFSFEDEDESSRWDQIEMQL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0042626	Molecular Function	ATPase activity, coupled to transmembrane movement of substances
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	70.310
SRP064423	SRR2545915	Juvenile tuber	79.550
SRP108465	SRR5643513	five period of Gastrodia elata	35.440
	SRR5643514	five period of Gastrodia elata	39.860
	SRR5643515	five period of Gastrodia elata	33.960
	SRR5643524	five period of Gastrodia elata	37.930
	SRR5643525	five period of Gastrodia elata	38.740
	SRR5643528	five period of Gastrodia elata	30.850
	SRR5643658	five period of Gastrodia elata	38.060
	SRR5643659	five period of Gastrodia elata	32.470
	SRR5643660	five period of Gastrodia elata	32.120
	SRR5643661	five period of Gastrodia elata	29.750
	SRR5643662	five period of Gastrodia elata	27.020
	SRR5643663	five period of Gastrodia elata	28.790
	SRR5643664	five period of Gastrodia elata	22.130
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	64.850
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	48.870
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	61.840
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	68.660
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	81.400
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	91.890
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	69.680
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	79.830
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	69.510
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	72.250
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	59.820
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	59.820
SRP279888	Gastro	Gastrodia elata tuber	25.02
	Juven	Juvenile tuber	34.48
	Mother_Gastro	Mother tuber of Gastrodia elata	23.77
	Mother_Juven	Mother tuber of Juvenile	31.58