Gene detail

Detail information of GWHGAAEX003341/evm.TU.scaffold_133.27

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1902	2.00E-115	Putative signal transduction protein involved in RNA splicing
nr	gi\|672190370\|ref\|XP_008775232.1\|	0	PREDICTED: zinc finger CCCH domain-containing protein 45-like [Phoenix dactylifera]
Swissprot	tr\|Q0DA50\|C3H45_ORYSJ	0	Zinc finger CCCH domain-containing protein 45
trEMBL	tr\|M0T8I0\|M0T8I0_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P19820_001}
TAIR	AT1G30460_2	2.00E-115	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000142	1283332	1339722	-

Transcript Sequence
>GWHTAAEX003341 ATGGAGGACCCGGAAGGGACCCTCAGTTTCGACTTCGAGGGAGGTCTTGATGCTGCCGCTCCTCAAGGCGCTGCAGCGGGATCAGCGCCCCTCATGCCCTCCGACATCGCTCCCGGTGCAAGCGTTGCGACTAATGGAAATATGGGATCCGCTGCCTCCGACGCAGTGATCGCCGGGGGAAACATCACAGGGCGTAGGAGCTTTCGTCAGACGGTGTGTAGGCACTGGCTCCGCAGCCTTTGCATGAAGGGAGAAGCCTGCGGATTTCTCCATCAGTACGATAAGGCCCGGATGCCAGTCTGCCGGTTCTTCCGCCTCTATGGAGAGTGCAGAGAACAGGATTGCGTCTATAAGCACACCAACGAGGACATCAAGGAGTGCAACATGTATAAATTTGGATTCTGTCCAAATGGTCCCGACTGTCGCTATAGGCATGCCAAACTCCCTGGTCCTCCTCCTTCTGTTGAAGAAGTATTTCAAAAGATTCAGCAACTGTTCAATTATGGCTCTTCAAACAGATTTTTCCAGCACCGAAATAATGGGTATAATCAACAGACAGAGAAGCCTCAATTGCTTCAAGCTTCAGCTGTTAATAATCAGTCCGCAGAACCAAAAATTCCTGGTGGAGTCGAGCCACTTGGTTCTCTGCAACAACCCCAAAGTCAGCTGTCTCAACAACAAGAAAATATACAACTGCAGCAGCAACCACATCAAACACAACAACAAAACTCTAGTGATAGTTTGGCGCCGATCATCACAAATGGCTTGCCTAACCAACCTAATAGAACTGCTTCACCTCTTCCTCAAGTGCAATCTAGGTGGTACTTTATTGTTAAAAGTTGCAATCGTGAAAACCTGGAAATTTCTGTTCAGCAAGGTGTTTGGGCAACTCAAAGGAGTAACGAGGCTAAACTTAATGAGGCATTTGAATCCATAGAGAATGTTATTTTAATATTCTCAATCAACTTTACACGACATTTTTTGGGATGTGCAAAGATGACTTCTAAAATTGGCGGGTTTATTGGTGGTGGCAATTGGAAATATGCTCATGGAACAGCTCACTATGGTCGAAACTTCTCAGTCAAATGGCTTAAGCTGTGTGAACTGTCTTTCAATAAAACCCATCATCTGAGAAATCCTTACAATGACAACCTTCCAGTAAAGATAAGTCGAGACTGCCAAGAATTGGAACCTTTTATTGGTGAGCAGCTGGCTTCTCTTCTTTATCTTGAATCAGACAGTGAACTTATGCAAATGCTTATTGCCGCGGAAACAAAGCGAGAGGAAGAGAAAGCGAAGGGCCACAACAACGCAGATGACACTGCTGAAAATCCAGATATCGTTCTGTTTGACGACAATGAAGAGGAGGAGGAAGACGAGAGTGATGAAGAGGATGAAGGGGCGGTAAGCGCACAAGGAAGAGGGCGCGGAAGAGGGATGTTCTGGCAGCCTCCCATGCCGCTGGCACGTGGAGGCAGGCCTGTCCTAAGTGTCCGCGGCTTCTCTCCTGTGATGATGGGCGTCGACGGCTTCGGTTACGGAGCCATCGGCCCCGAGGGATTTGCTGCTCCAGATATCTTTGGAGGGCCTCCCAGGGTTTTCCCTCCCTTTGGGGGCCCGAGATTTTCCAGCGATTTCTCTGGCGCTGTAGGCCCCATGCAAGGGTTAGTTTTTCCTTCCCGACCGCCCCAACCCGGCCTCTTTCCAATGAGCGGACTCGGAATGATGATGGGTTCTGGTCGAGCCTTCATGGCTGGGCTGCCCATGGCGGGCGTTGGTCGCCCCAATCGCCCCCTTGGCATCCCCGCTTTTCTTCACCCGCCTCCCCCGCTGCCCAACAACAATTGGGCGCCAAAGAGGGAACCGAGGAGATCCACGGCTGAAAGCCGATATGAATCTGGATCAGATCAGGGGATCAGAGGCGGCCATGATCAGACAACCGATCACGATGATAACAACAATAGATACACAAATGATGACAGTGAGAGCGACAATGAGGCAGCTCCTAGAAGGTCCAGACATGGGGAAGCCAGTAAGAAGCGGCGTGGATCCGATGGTGAAGCTGCAGCTGATCATTGGGAGGCCCCTCATACTGAAGATTCAAGTCATTGA

Network for GWHGAAEX003341

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04146.14	YTH	275	407	1.20E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14404	CPSF4, YTH1	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0046872	Molecular Function	metal ion binding
GO:0003723	Molecular Function	RNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	45.160
SRP064423	SRR2545915	Juvenile tuber	49.240
SRP108465	SRR5643513	five period of Gastrodia elata	41.390
	SRR5643514	five period of Gastrodia elata	35.790
	SRR5643515	five period of Gastrodia elata	35.000
	SRR5643524	five period of Gastrodia elata	32.290
	SRR5643525	five period of Gastrodia elata	32.350
	SRR5643528	five period of Gastrodia elata	27.350
	SRR5643658	five period of Gastrodia elata	35.320
	SRR5643659	five period of Gastrodia elata	45.670
	SRR5643660	five period of Gastrodia elata	52.600
	SRR5643661	five period of Gastrodia elata	48.530
	SRR5643662	five period of Gastrodia elata	57.810
	SRR5643663	five period of Gastrodia elata	52.610
	SRR5643664	five period of Gastrodia elata	61.730
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	53.400
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	49.910
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	42.170
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	56.970
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	44.780
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	56.460
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	53.070
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	43.290
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	42.240
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	44.650
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	37.380
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	37.380
SRP279888	Gastro	Gastrodia elata tuber	54.38
	Juven	Juvenile tuber	64.35
	Mother_Gastro	Mother tuber of Gastrodia elata	32.47
	Mother_Juven	Mother tuber of Juvenile	48.30