Detail information of GWHGAAEX003344/evm.TU.scaffold_133.33


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG19961.00E-156mRNA splicing factor
nrgi|743803569|ref|XP_010926953.1|0PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic-like [Elaeis guineensis]
Swissprottr|P42698|DR111_ARATH3.00E-157DNA-damage-repair/toleration protein DRT111, chloroplastic (Precursor)
trEMBLtr|F6HLX4|F6HLX4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB55849.1}
TAIRAT1G304801.00E-156D111/G-patch domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000014215913891607098+
Transcript Sequence

Network for GWHGAAEX003344

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01585.22G-patch2192582.40E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12840RBM17, SPF45 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0043484Biological Processregulation of RNA splicing
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms51.510
SRR2545915Juvenile tuber53.880
SRP108465SRR5643513five period of Gastrodia elata54.910
SRR5643514five period of Gastrodia elata41.480
SRR5643515five period of Gastrodia elata49.570
SRR5643524five period of Gastrodia elata43.440
SRR5643525five period of Gastrodia elata47.290
SRR5643528five period of Gastrodia elata46.960
SRR5643658five period of Gastrodia elata37.640
SRR5643659five period of Gastrodia elata86.920
SRR5643660five period of Gastrodia elata91.610
SRR5643661five period of Gastrodia elata88.260
SRR5643662five period of Gastrodia elata94.990
SRR5643663five period of Gastrodia elata87.790
SRR5643664five period of Gastrodia elata83.330
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_154.420
SRR6049655Rhizomagastrodiae_C368-T10_good_159.410
SRR6049656Rhizomagastrodiae_C368-T07_good_150.550
SRR6049657Rhizomagastrodiae_C368-T07_good_147.830
SRR6049658Rhizomagastrodiae_C368-T04_good_146.290
SRR6049659Rhizomagastrodiae_C368-T04_good_150.020
SRR6049660Rhizomagastrodiae_C368-T01_good_146.570
SRR6049661Rhizomagastrodiae_C368-T04_good_152.900
SRR6049662Rhizomagastrodiae_C368-T01_good_151.560
SRR6049663Rhizomagastrodiae_C368-T01_good_148.690
SRR6049664Rhizomagastrodiae_C368-T10_good_157.900
SRR6049665Rhizomagastrodiae_C368-T10_good_157.900
SRP279888GastroGastrodia elata tuber 79.99
JuvenJuvenile tuber75.61
Mother_GastroMother tuber of Gastrodia elata 55.26
Mother_JuvenMother tuber of Juvenile 77.08