Gene detail

Detail information of GWHGAAEX003346/evm.TU.scaffold_133.42

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743792420\|ref\|XP_010923678.1\|	PREDICTED: homeobox-leucine zipper protein HOX32 [Elaeis guineensis]
Swissprot	tr\|Q6AST1\|HOX32_ORYSJ	Homeobox-leucine zipper protein HOX32
trEMBL	tr\|I0IUI5\|I0IUI5_ASPOF	Class III homeobox-leucine zipper protein {ECO:0000313\|EMBL:BAM08934.1}
TAIR	AT2G34710	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000142	1912859	1922492	+

Transcript Sequence
>GWHTAAEX003346 AAGCATCAGCAATTAATAAAGAAACAAAATAAAAAAAACAGAGGTTCTGCACTCTGCTCTCTCTCTCTCTCCACTGTCCTCCGCTTTTTCTTATTTTATTATTTTCTTACGCATTGGCTTGCCTGTTGCCTGGTTTAGAGCGCTAAAGCTTGCTCCTTTCTCTTGGAAAATGAACTTCGTGGGAGCTGAGAACCGCCTGTTGGTATTAGGGTTGGTGCATCTCTTTAGTCTCTGGCTCAGCTCTTCTTCTCTGCTCTGATGCGGGAAGGTTCGGAGGCTTGGCTGAGCAAAAAGGGGATTTTTTGAGCTCTTTTGGCTTTAATTTGGAGGTGAAAGCTGAGGAATTGGGGGAAAATGGCGAGTGTGGGAAAAGAAGGGAAATCTCAGCAGCATGAGCTGCAGCAGATTGATTCAGGAAAGTATGTTCGATACACGCCGGAGCAAGTGGAGGCGCTTGAGAGGGTTTATATGGAGTGCCCCAAACCGAGCTCATTGAGAAGGCAACAGCTCATAAGGGACTGCCCCATACTCTCCAACATCGAGCCAAAGCAGATCAAAGTCTGGTTTCAGAACAGGAGGTGCCGTGAGAAGCAAAGAAAAGAGGCTTCTCGCCTCCAAACTGTTAACCGAAAGCTAACTGCTATGAACAAGCTCTTGATGGAGGAGAATGACCGCTTGCAGAAACAGGTGTCTCACTTAGTTTATGAGAATGGATGCATGCGCCAACAACTTCACACTGCACCTGCGGCAACTACAGACAATAGCTGCGAGTCTGTAGTGACAAGTGGCCAAAACCAGCAGCAGCACAAGTCCAAATTGCATCATTTTCAAAGGGATGCTAACAATCCTGCAGGTCTACTAGCTATTGCTGAGGAGACCTTATCGGAGTTTCTCTCAAAGGCCACTGGAACTTCTGTTGAATGGGTTCCGATGGTTGGAATGAAGCCTGGTCCGGATTCTATTGGAATCATTGCTGTTTCACACAATTGCAGCGGTGTGGCAGCACGTGCATGCGGTCTTGTGAGCTTAGAGCCCACAAAGGTTGCAGAGATTCTTAAAGCTCGTCTCTCTTGGTATCGTGATTGCCGATGCCTTAATGTGGTCACGGTGATCCCTGCTGGGAATGGAGGAAATATTGAGCTGATGTATATGCAGACATATGCACCTACAACTCTTGCCTCAGCTCGAGATTTTTGGACTATCAGATACACTACGGGTCTTGATGATGGGAGTCTTGTGATCTGCGAGAGGTCATTGACATCTTCGACTGGTGGTCCTCCGGGGCCTTCTGCTCCGAACTTTGTTAGGGCTGAAATGCTTCCTAGTGGGTATCTTATTAGGCCTTGTGAGGGTGGTGGATCAATGATTCATATTGTTGATCATGTTGATTTGGATGCTAGGACTGTGCCTGAGGTTCTAAGGCCGCTGTACGAATCACCAAAGATAGTGGCACATAAGATGACTATTTCTGCATTGCGTTATCTGAGGCAAATTGCACATGAAACGAGCGGTGAAGTTGTTTATAGTGGCGGTCGCCAACCTGCAGTTTTAAGAACCTTTAGTCAGAGGCTGAGCAGAGGCTTTAATGATGCCATAAATGGATTCATGGATGATGGCTGGTCCTTAATGAGCAGTGATGGTGGAGATGATGTTACCATAACTATAAATTCTTCCCCAACCAAACTTCTTGGTTCTGTGAATTCATCCCCTCTCCTTGCCTTTGGTGGTGGCATTCTTTGTGCAAAGGCTTCCATGCTACTTCAGAATGTCCCACCGGCCTTGCTGGTTCGCTTTCTGAGGGAACATCGTTCCGAGTGGGCTGACTGCGGGGCTGACGCATATTCTACCGCATCACTGAGAGCCAGTTCTTATCCAGTTCTAGGTGCAAGAGCTGGTGGAAGCTTTCATGGAGGTCAGGTTATTCTTCCTCTTGCTCAAACAGTGGAAAATGAAGAGTTCTTGGAGGTGATTAGACTGGAAGGTCATGGTTTCAATCAGGATGATGTTACTAGGGACATGTATCTATTACAGCTATGCAGTGGAGTGGATGAGAATGCTGTTGGTGCTTGTTCTCAACTCGTGTTTGCACCCATTGATGAATCTTTTGCTGATGATGCCCCTTTACTTCCTTCCGGTTTTCGTGTTATTCCTCTTGAATCTAAAACAGATGCACATGTGGCTGCTAGAACTCTTGATCTTGCATCTGCTCTAGAAGTTGGTTCGGGCGGTGGAATGCGCCCAACAGTTGAATCCGTCCCTAGTTTGTCGAGCCTGAGATCCGTCTTGACCATAGCATTTCAATTCACATTCGAGAATCATTTTCGTGAAAATATGGCGGCCATGGCTCGACAATATGTGCGCAGTGTTGTGGCTTCAGTGCAAAGGGTTGCCATGGCTATCTCTCCTTTGCGTGTTGGCTCGTTTGGGGCGAAACATCTTAACGGGTCTCCAGAGGGGCAAACTTTGGCACGTTGGATATCGCGAAGTTATAAGCTTCATACCGGCACTGATCTCTTCCGCTCTAAACCTGGATCAGAACCTGATGCTGATCCGGAGACCAGCGATTCTTTATTGAAACTCCTGTGGCATTATCCTGATGCAATAATGTGCTGCACTCTCAAGTCCTCTCCAGTATTTACATTTGCAAATCAAGCAGGCCTCGACATGCTTGAAACAACTCTGATTGCCCTTCAGGACATAACGCTCGAGAAAATTCTCGATGATAGTGGCCGCAGGGTCTTCTGCTCTGAATTCTCTAAAATCATGCAACAGGGGTTTTCTTATCTTCCCGGTGGTATATGTCTTTCGAGCATGGGGAGGCCTGCTTCGTATGATCAAGTCATCGCCTGGAAAGTCCTCGATGAAGAAGAGACTCACCATTGCTTAGCTTTCATGTTCATGAACTGGTCATTTGTGTAAGAACCCCTTATTTGTAACTTTTTGCTTATATTTTGATGTCATTGCTTACATTTTGATGACCAAACACTTGTGCTATTTATCACTCGTATGCTTGTTTTGTTGAGACTTAGTGTTACATCTGTGTGCATCAATTGTTTGTTGGCTTTTGAATTATATGATATTATTACGATCTTGTGAAATGAAACATTTGGTTTTATGTTTGGGAAGATTTTATATATACCATTGATTGCAT

Network for GWHGAAEX003346

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module3

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.28	Homeobox	23	80	8.80E-16
PF01852.18	START	171	379	7.90E-47
PF08670.10	MEKHLA	703	853	9.10E-48

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-HD-ZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008289	Molecular Function	lipid binding
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	22.320
SRP064423	SRR2545915	Juvenile tuber	26.330
SRP108465	SRR5643513	five period of Gastrodia elata	8.370
	SRR5643514	five period of Gastrodia elata	23.660
	SRR5643515	five period of Gastrodia elata	15.030
	SRR5643524	five period of Gastrodia elata	15.180
	SRR5643525	five period of Gastrodia elata	72.440
	SRR5643528	five period of Gastrodia elata	38.180
	SRR5643658	five period of Gastrodia elata	125.860
	SRR5643659	five period of Gastrodia elata	88.900
	SRR5643660	five period of Gastrodia elata	88.000
	SRR5643661	five period of Gastrodia elata	64.520
	SRR5643662	five period of Gastrodia elata	147.660
	SRR5643663	five period of Gastrodia elata	200.950
	SRR5643664	five period of Gastrodia elata	202.770
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.660
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.510
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.700
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.370
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	21.600
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	22.620
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.800
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.660
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.920
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.440
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.440
SRP279888	Gastro	Gastrodia elata tuber	238.57
	Juven	Juvenile tuber	45.77
	Mother_Gastro	Mother tuber of Gastrodia elata	6.83
	Mother_Juven	Mother tuber of Juvenile	12.48