Detail information of GWHGAAEX003355/evm.TU.scaffold_133.52
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502234|ref|YP_001957951.1| | 9.00E-14 | hypothetical protein Aasi_0851 [Candidatus Amoebophilus asiaticus 5a2] |
| KOG | KOG0167 | 1.00E-108 | FOG: Armadillo/beta-catenin-like repeats |
| nr | gi|672182866|ref|XP_008811691.1| | 0 | PREDICTED: U-box domain-containing protein 13-like [Phoenix dactylifera] |
| Swissprot | tr|Q9C7R6|PUB17_ARATH | 3.00E-109 | U-box domain-containing protein 17 |
| trEMBL | tr|V4SMK5|V4SMK5_9ROSI | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESR49018.1} |
| TAIR | AT1G29340 | 1.00E-108 | plant U-box 17 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000142 | 2355677 | 2358025 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003355
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04564.14 | U-box | 273 | 344 | 9.50E-23 |
| PF00514.22 | Arm | 407 | 444 | 4.80E-08 |
| PF00514.22 | Arm | 531 | 569 | 2.80E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016567 | Biological Process | protein ubiquitination |
| GO:0004842 | Molecular Function | ubiquitin-protein transferase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.380 |
| SRR2545915 | Juvenile tuber | 5.460 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.610 |
| SRR5643514 | five period of Gastrodia elata | 11.760 | |
| SRR5643515 | five period of Gastrodia elata | 11.080 | |
| SRR5643524 | five period of Gastrodia elata | 10.180 | |
| SRR5643525 | five period of Gastrodia elata | 33.860 | |
| SRR5643528 | five period of Gastrodia elata | 17.920 | |
| SRR5643658 | five period of Gastrodia elata | 50.270 | |
| SRR5643659 | five period of Gastrodia elata | 10.950 | |
| SRR5643660 | five period of Gastrodia elata | 13.720 | |
| SRR5643661 | five period of Gastrodia elata | 14.890 | |
| SRR5643662 | five period of Gastrodia elata | 12.690 | |
| SRR5643663 | five period of Gastrodia elata | 16.030 | |
| SRR5643664 | five period of Gastrodia elata | 9.910 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.070 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 20.850 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.150 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.800 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.080 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.010 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.200 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.230 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 19.830 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.880 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.880 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.78 |
| Juven | Juvenile tuber | 9.57 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.77 | |
| Mother_Juven | Mother tuber of Juvenile | 7.71 |