Detail information of GWHGAAEX003361/evm.TU.scaffold_133.62


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16092.00E-130Protein involved in mRNA turnover and stability
nrgi|672128122|ref|XP_008787541.1|0PREDICTED: uncharacterized protein LOC103705558 [Phoenix dactylifera]
trEMBLtr|A0A0A0KGV2|A0A0A0KGV2_CUCSA0Uncharacterized protein {ECO:0000313|EMBL:KGN48783.1}
TAIRAT2G221202.00E-130RING/FYVE/PHD zinc finger superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000014226745772707687-
Transcript Sequence

Network for GWHGAAEX003361

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12906.6RINGv38852.10E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270Molecular Functionzinc ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.600
SRR2545915Juvenile tuber27.660
SRP108465SRR5643513five period of Gastrodia elata27.640
SRR5643514five period of Gastrodia elata27.870
SRR5643515five period of Gastrodia elata24.560
SRR5643524five period of Gastrodia elata23.270
SRR5643525five period of Gastrodia elata50.600
SRR5643528five period of Gastrodia elata43.200
SRR5643658five period of Gastrodia elata63.040
SRR5643659five period of Gastrodia elata22.310
SRR5643660five period of Gastrodia elata20.960
SRR5643661five period of Gastrodia elata22.760
SRR5643662five period of Gastrodia elata27.640
SRR5643663five period of Gastrodia elata27.800
SRR5643664five period of Gastrodia elata32.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_138.670
SRR6049655Rhizomagastrodiae_C368-T10_good_137.000
SRR6049656Rhizomagastrodiae_C368-T07_good_133.010
SRR6049657Rhizomagastrodiae_C368-T07_good_144.980
SRR6049658Rhizomagastrodiae_C368-T04_good_153.460
SRR6049659Rhizomagastrodiae_C368-T04_good_155.060
SRR6049660Rhizomagastrodiae_C368-T01_good_140.110
SRR6049661Rhizomagastrodiae_C368-T04_good_145.980
SRR6049662Rhizomagastrodiae_C368-T01_good_126.770
SRR6049663Rhizomagastrodiae_C368-T01_good_130.450
SRR6049664Rhizomagastrodiae_C368-T10_good_130.820
SRR6049665Rhizomagastrodiae_C368-T10_good_130.820
SRP279888GastroGastrodia elata tuber 55.71
JuvenJuvenile tuber55.53
Mother_GastroMother tuber of Gastrodia elata 49.70
Mother_JuvenMother tuber of Juvenile 48.60