Detail information of GWHGAAEX003363/evm.TU.scaffold_134.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1601 | 9.00E-44 | GATA-4/5/6 transcription factors |
| nr | gi|695021981|ref|XP_009398099.1| | 6.88E-61 | PREDICTED: GATA transcription factor 5-like isoform X1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O65515|GATA7_ARATH | 3.00E-44 | GATA transcription factor 7 |
| trEMBL | tr|B6TWI7|B6TWI7_MAIZE | 2.00E-51 | GATA zinc finger family protein {ECO:0000313|EMBL:ACG41470.1} |
| TAIR | AT4G36240 | 9.00E-44 | GATA transcription factor 7 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000139 | 44817 | 47973 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003363
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00320.26 | GATA | 296 | 330 | 1.30E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-GATA |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 23.450 |
| SRR2545915 | Juvenile tuber | 25.620 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 35.040 |
| SRR5643514 | five period of Gastrodia elata | 17.630 | |
| SRR5643515 | five period of Gastrodia elata | 40.590 | |
| SRR5643524 | five period of Gastrodia elata | 21.590 | |
| SRR5643525 | five period of Gastrodia elata | 86.210 | |
| SRR5643528 | five period of Gastrodia elata | 54.710 | |
| SRR5643658 | five period of Gastrodia elata | 50.680 | |
| SRR5643659 | five period of Gastrodia elata | 51.050 | |
| SRR5643660 | five period of Gastrodia elata | 27.300 | |
| SRR5643661 | five period of Gastrodia elata | 49.880 | |
| SRR5643662 | five period of Gastrodia elata | 51.890 | |
| SRR5643663 | five period of Gastrodia elata | 36.640 | |
| SRR5643664 | five period of Gastrodia elata | 105.940 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 56.420 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 59.070 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 50.100 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 55.340 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 57.220 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 62.560 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 69.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 54.610 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 33.960 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 62.200 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 42.890 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 42.890 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 19.88 |
| Juven | Juvenile tuber | 43.91 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 192.20 | |
| Mother_Juven | Mother tuber of Juvenile | 170.92 |