Detail information of GWHGAAEX003367/evm.TU.scaffold_134.7


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|573940373|ref|XP_006652591.1|5.91E-62PREDICTED: probable salt tolerance-like protein At1g75540-like [Oryza brachyantha]
Swissprottr|Q9LQZ7|BBX21_ARATH3.00E-48B-box zinc finger protein 21 {ECO:0000303|PubMed:19920209}
trEMBLtr|J3LZZ7|J3LZZ7_ORYBR2.00E-62Uncharacterized protein {ECO:0000313|EnsemblPlants:OB04G27220.1}
TAIRAT1G755401.00E-47salt tolerance homolog2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000139168533169489+
Transcript Sequence

Network for GWHGAAEX003367

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00643.23zf-B_box56985.10E-07
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyOthers

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270Molecular Functionzinc ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.600
SRR2545915Juvenile tuber0.340
SRP108465SRR5643513five period of Gastrodia elata3.090
SRR5643514five period of Gastrodia elata3.120
SRR5643515five period of Gastrodia elata2.980
SRR5643524five period of Gastrodia elata1.580
SRR5643525five period of Gastrodia elata24.370
SRR5643528five period of Gastrodia elata18.320
SRR5643658five period of Gastrodia elata18.680
SRR5643659five period of Gastrodia elata1.210
SRR5643660five period of Gastrodia elata0.280
SRR5643661five period of Gastrodia elata0.480
SRR5643662five period of Gastrodia elata4.950
SRR5643663five period of Gastrodia elata5.220
SRR5643664five period of Gastrodia elata5.460
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_12.510
SRR6049655Rhizomagastrodiae_C368-T10_good_19.080
SRR6049656Rhizomagastrodiae_C368-T07_good_13.840
SRR6049657Rhizomagastrodiae_C368-T07_good_12.040
SRR6049658Rhizomagastrodiae_C368-T04_good_11.670
SRR6049659Rhizomagastrodiae_C368-T04_good_11.090
SRR6049660Rhizomagastrodiae_C368-T01_good_14.460
SRR6049661Rhizomagastrodiae_C368-T04_good_13.190
SRR6049662Rhizomagastrodiae_C368-T01_good_13.740
SRR6049663Rhizomagastrodiae_C368-T01_good_12.360
SRR6049664Rhizomagastrodiae_C368-T10_good_19.540
SRR6049665Rhizomagastrodiae_C368-T10_good_19.540
SRP279888GastroGastrodia elata tuber 7.03
JuvenJuvenile tuber0.33
Mother_GastroMother tuber of Gastrodia elata 39.72
Mother_JuvenMother tuber of Juvenile 3.69