Gene detail

Detail information of GWHGAAEX003369/evm.TU.scaffold_134.9

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|427720026\|ref\|YP_007068020.1\|	1.00E-136	aldehyde dehydrogenase [Calothrix sp. PCC 7507]
KOG	KOG2456	7.00E-167	Aldehyde dehydrogenase
nr	gi\|743777850\|ref\|XP_010919365.1\|	0	PREDICTED: aldehyde dehydrogenase family 3 member F1 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q70E96\|AL3F1_ARATH	0	Aldehyde dehydrogenase family 3 member F1
trEMBL	tr\|B6SKK8\|B6SKK8_MAIZE	0	Aldehyde dehydrogenase {ECO:0000256\|PIRNR:PIRNR036492}
TAIR	AT1G44170	7.00E-167	aldehyde dehydrogenase 3H1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000139	180924	218218	-

Transcript Sequence
>GWHTAAEX003369 GCCTCTATCGGTTTGTAGTTTTTCCATCATCTCAATTAAATTCGAAGAATGGGGATGCATTTTCAAGGTGAAAGAAACCGGGATCACAAGTCAGGGGAGTCAAGAGAAGAGGGGAAAACAGCATGGAGGTGGAAAGGGCTGTGAAGGAAGCAAGAGAAGCGTTTGAGAGCGGGATAACAAGGGGTTATTCATGGCGAAGGTCTCAGCTCAAGGCTCTCAACCTTCTCCTTCTAGAGAAAGAGTCCGAGATCTGCGAAGCTCTTCGGCTTGACCTAGGCAAGCATCGCATCGAAGCTTTCAGAGATGAGATAGGTTTGATTATCAAATCTGTGAACTGTGCGCTCAAGAATCTCAAAAAATGGATGGCACCCAAAAAGGTTGATCTCCCACTTCTATGCTTCCCAGCTACTGGAGAGATAATGGCTGAGCCACTCGGTGTCGTTCTTATTTTCTCTTCATGGAACTTCCCTATAGGATTGTCATTGGAACCCCTGATTGGAGCTATATCAGCTGGAAATGCTGCAGTCTTGAAGCCCTCAGAACTTGCGCCTGCTTCCTCCAAGTTTTTGGCAACCAATCTTCCTCGGTATTTGGACAAGTCTGTGAAGGTTGTGGAAGGCGATCCTGACATAGGAGAGCAATTGTTGGTACACAAATGGGATAAAATCTTTTTTACTGGGAGCTCGAGAGTTGGACGCATCGTTATGACCGCTGCTGCTAAGCATCTCACTCCAGTATCCCTTGAACTTGGAGGAAAATGCCCTGCTATTATAGATACCCTCTCCCTCTCAAGTGCAAGAGATTTAGAGGTGACCATAACCAGAGTGGCTGGAGCGAAGTGGGGTCTTTGCAGCGGCCAAGCATGCATAGCAGTTGATTATTTGCTCGTTGAAGAGATATATGCACCCCTTTTGATTGATTTATTGAAGGCAAAGATCAAGAAATCCTACGATGAGCCTAAGGACCTTGCTAGGATTGCCCACAGGCAGCATTTTCAAAGGTTGAGCGACTTTTTCAAGGATCCAGCAGTAGAAGCCTCAGTTGTGCATGGTGGTTCACTCAATCATGAAAGCCTGTTGATTGAGCCAACCATACTACTGAATCCCCCTTTGGATTCTGAAATAATGAGAGAGGAAATTTTTGGTCCATTGCTTCCGATTATCACCGTAAAGAAGATTGAAGATTGCTTTGAATTCCTGAGAACAAGGCCAAAGCCTCTGGTCATTTATGCCTTCACCGTCAATGAGAAGCTGAAGGGAAGGTTCGTCGAAGAAACATCTTCCGGAAGTCTTTGTTTTAATGACACGGTGATACAGTTTGCTATCGATGTGCTGCCCTTTGGGGGAATTAGTGACAGCGGCTTTGGAAAGTACCACGGCAAGTTCTCCTTTGACCAGTTCAGCCACGATAAGCCCATTCTGAGAAGAAGTTTTTCCTTAGACTTTCCATTTAGATACCCTCCTTGGGCTGAGTGGAAACTCCAGGTACTCAGATATGCTTATTGTTTTAACTATGTTGGGATGCTGCTGGTGGTACTTGGCCTCAAGAGATGAGGTGTTGGAGAGGTAATAGACATATTATTAAGTTTAAAGAACTTTTTTTAAGTGTGTAAAATTAATTGTGGGCTTGCTGTTTGAAAATAAGAATGTTGAGTTTTCTAAAGCATTTTAACATAGAGGCATTACTATTACTGGCATGCCACCAAAATCTTTGAGAATTTACATGTCTAGCAGTCAAAGTTCAATATTTACAAAATTAATATTCTTCATCTGCTTACAATGATTTGAAAGAACTTACAGTTTAGTGGTAGTTTTGATATAACGATAGGTTTATTG

Network for GWHGAAEX003369

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00171.21	Aldedh	2	430	1.10E-72

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00128	ALDH	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Biosynthesis of antibiotics	map01130
		Glycolysis / Gluconeogenesis	map00010
		Ascorbate and aldarate metabolism	map00053
		Pyruvate metabolism	map00620
		Fatty acid degradation	map00071
		Glycerolipid metabolism	map00561
		Cysteine and methionine metabolism	map00270
		Lysine degradation	map00310
		Arginine and proline metabolism	map00330
		Histidine metabolism	map00340
		Tryptophan metabolism	map00380
		beta-Alanine metabolism	map00410
		Insect hormone biosynthesis	map00981
		Limonene and pinene degradation	map00903
		Chloroalkane and chloroalkene degradation	map00625

Gene Ontology

GO term	Ontology	Name
GO:0006081	Biological Process	cellular aldehyde metabolic process
GO:0055114	Biological Process	oxidation-reduction process
GO:0016620	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0016491	Molecular Function	oxidoreductase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.450
SRP064423	SRR2545915	Juvenile tuber	18.870
SRP108465	SRR5643513	five period of Gastrodia elata	51.930
	SRR5643514	five period of Gastrodia elata	30.590
	SRR5643515	five period of Gastrodia elata	92.180
	SRR5643524	five period of Gastrodia elata	67.150
	SRR5643525	five period of Gastrodia elata	28.040
	SRR5643528	five period of Gastrodia elata	50.580
	SRR5643658	five period of Gastrodia elata	24.690
	SRR5643659	five period of Gastrodia elata	49.870
	SRR5643660	five period of Gastrodia elata	35.220
	SRR5643661	five period of Gastrodia elata	43.260
	SRR5643662	five period of Gastrodia elata	45.240
	SRR5643663	five period of Gastrodia elata	58.020
	SRR5643664	five period of Gastrodia elata	14.470
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.890
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.750
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.420
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.460
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.680
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.770
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.850
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.470
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.400
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.800
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	16.060
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	16.060
SRP279888	Gastro	Gastrodia elata tuber	19.82
	Juven	Juvenile tuber	7.86
	Mother_Gastro	Mother tuber of Gastrodia elata	22.73
	Mother_Juven	Mother tuber of Juvenile	14.84