Detail information of GWHGAAEX003370/evm.TU.scaffold_134.11


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|343085920|ref|YP_004775215.1|3.00E-23RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
KOGKOG06196.00E-107FOG: Leucine rich repeat
nrgi|672145900|ref|XP_008796883.1|1.73E-147PREDICTED: leucine-rich repeat receptor-like kinase protein THICK TASSEL DWARF1 [Phoenix dactylifera]
Swissprottr|Q9LYN8|EXS_ARATH5.00E-28Leucine-rich repeat receptor protein kinase EXS (Precursor)
trEMBLtr|B9R831|B9R831_RICCO2.00E-120Serine-threonine protein kinase, plant-type, putative {ECO:0000313|EMBL:EEF52661.1}
TAIRAT5G663306.00E-107Leucine-rich repeat (LRR) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000139256428258748+
Transcript Sequence

Network for GWHGAAEX003370

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13516.5LRR_62442581.7
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.430
SRR2545915Juvenile tuber2.970
SRP108465SRR5643513five period of Gastrodia elata19.880
SRR5643514five period of Gastrodia elata14.830
SRR5643515five period of Gastrodia elata26.410
SRR5643524five period of Gastrodia elata11.870
SRR5643525five period of Gastrodia elata7.460
SRR5643528five period of Gastrodia elata7.230
SRR5643658five period of Gastrodia elata4.280
SRR5643659five period of Gastrodia elata28.860
SRR5643660five period of Gastrodia elata19.730
SRR5643661five period of Gastrodia elata29.680
SRR5643662five period of Gastrodia elata27.140
SRR5643663five period of Gastrodia elata29.760
SRR5643664five period of Gastrodia elata16.330
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_124.410
SRR6049655Rhizomagastrodiae_C368-T10_good_126.680
SRR6049656Rhizomagastrodiae_C368-T07_good_118.900
SRR6049657Rhizomagastrodiae_C368-T07_good_115.460
SRR6049658Rhizomagastrodiae_C368-T04_good_18.790
SRR6049659Rhizomagastrodiae_C368-T04_good_15.040
SRR6049660Rhizomagastrodiae_C368-T01_good_111.770
SRR6049661Rhizomagastrodiae_C368-T04_good_113.710
SRR6049662Rhizomagastrodiae_C368-T01_good_132.270
SRR6049663Rhizomagastrodiae_C368-T01_good_119.100
SRR6049664Rhizomagastrodiae_C368-T10_good_126.290
SRR6049665Rhizomagastrodiae_C368-T10_good_126.290
SRP279888GastroGastrodia elata tuber 12.20
JuvenJuvenile tuber3.34
Mother_GastroMother tuber of Gastrodia elata 7.24
Mother_JuvenMother tuber of Juvenile 2.48