Detail information of GWHGAAEX003376/evm.TU.scaffold_134.18
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-31 | FOG: PPR repeat |
| nr | gi|672148612|ref|XP_008797200.1| | 3.59E-59 | PREDICTED: putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Phoenix dactylifera] |
| Swissprot | tr|P0C8Q6|PP368_ARATH | 2.00E-34 | Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial (Precursor) |
| trEMBL | tr|M0SXG6|M0SXG6_MUSAM | 2.00E-51 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P10870_001} |
| trEMBL | tr|M0SXG6|M0SXG6_MUSAM | 1.00E-15 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P10870_001} |
| TAIR | AT5G08310 | 1.00E-31 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000139 | 427989 | 428522 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003376
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 8 | 56 | 4.10E-18 |
| PF12854.6 | PPR_1 | 74 | 106 | 2.00E-06 |
| PF01535.19 | PPR | 117 | 146 | 0.096 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.980 |
| SRR2545915 | Juvenile tuber | 1.560 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.350 |
| SRR5643514 | five period of Gastrodia elata | 1.020 | |
| SRR5643515 | five period of Gastrodia elata | 1.250 | |
| SRR5643524 | five period of Gastrodia elata | 1.280 | |
| SRR5643525 | five period of Gastrodia elata | 0.490 | |
| SRR5643528 | five period of Gastrodia elata | 1.140 | |
| SRR5643658 | five period of Gastrodia elata | 1.730 | |
| SRR5643659 | five period of Gastrodia elata | 1.810 | |
| SRR5643660 | five period of Gastrodia elata | 1.400 | |
| SRR5643661 | five period of Gastrodia elata | 1.620 | |
| SRR5643662 | five period of Gastrodia elata | 1.830 | |
| SRR5643663 | five period of Gastrodia elata | 0.760 | |
| SRR5643664 | five period of Gastrodia elata | 0.740 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.750 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.150 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.210 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.760 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.080 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.090 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.750 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.180 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.180 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.47 |
| Juven | Juvenile tuber | 2.56 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.70 | |
| Mother_Juven | Mother tuber of Juvenile | 1.25 |