Detail information of GWHGAAEX003377/evm.TU.scaffold_134.19


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672127188|ref|XP_008787056.1|0PREDICTED: nibrin isoform X1 [Phoenix dactylifera]
Swissprottr|Q7XD82|NBS1_ORYSJ2.00E-156Nijmegen breakage syndrome 1 protein {ECO:0000303|PubMed:17182003}
trEMBLtr|M0SZW6|M0SZW6_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P19370_001}
TAIRHS45053391.00E-22Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000139444892469614-
Transcript Sequence

Network for GWHGAAEX003377

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00498.25FHA251117.10E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10867NBN, NBS1 Homologous recombination map03440
Cellular senescencemap04218

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.040
SRR2545915Juvenile tuber25.600
SRP108465SRR5643513five period of Gastrodia elata23.110
SRR5643514five period of Gastrodia elata24.020
SRR5643515five period of Gastrodia elata22.510
SRR5643524five period of Gastrodia elata25.340
SRR5643525five period of Gastrodia elata23.050
SRR5643528five period of Gastrodia elata22.820
SRR5643658five period of Gastrodia elata22.760
SRR5643659five period of Gastrodia elata22.860
SRR5643660five period of Gastrodia elata24.330
SRR5643661five period of Gastrodia elata19.530
SRR5643662five period of Gastrodia elata23.230
SRR5643663five period of Gastrodia elata22.390
SRR5643664five period of Gastrodia elata17.880
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_121.840
SRR6049655Rhizomagastrodiae_C368-T10_good_122.990
SRR6049656Rhizomagastrodiae_C368-T07_good_125.170
SRR6049657Rhizomagastrodiae_C368-T07_good_121.670
SRR6049658Rhizomagastrodiae_C368-T04_good_126.030
SRR6049659Rhizomagastrodiae_C368-T04_good_123.340
SRR6049660Rhizomagastrodiae_C368-T01_good_124.880
SRR6049661Rhizomagastrodiae_C368-T04_good_123.760
SRR6049662Rhizomagastrodiae_C368-T01_good_131.670
SRR6049663Rhizomagastrodiae_C368-T01_good_130.760
SRR6049664Rhizomagastrodiae_C368-T10_good_128.940
SRR6049665Rhizomagastrodiae_C368-T10_good_128.940
SRP279888GastroGastrodia elata tuber 22.25
JuvenJuvenile tuber16.36
Mother_GastroMother tuber of Gastrodia elata 19.79
Mother_JuvenMother tuber of Juvenile 18.47