Detail information of GWHGAAEX003383/evm.TU.scaffold_134.27
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|146298365|ref|YP_001192956.1| | 6.00E-22 | two component regulator [Flavobacterium johnsoniae UW101] |
| nr | gi|743831619|ref|XP_010934748.1| | 0 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 [Elaeis guineensis] |
| Swissprot | tr|C0LGH8|Y1634_ARATH | 0 | Probable LRR receptor-like serine/threonine-protein kinase At1g63430 (Precursor) |
| trEMBL | tr|M0U2X3|M0U2X3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P23660_001} |
| TAIR | AT1G63430 | 0 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000139 | 678212 | 707523 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003383
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 73 | 112 | 2.40E-07 |
| PF07714.16 | Pkinase_Tyr | 409 | 676 | 7.20E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-VI-2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 33.010 |
| SRR2545915 | Juvenile tuber | 33.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.630 |
| SRR5643514 | five period of Gastrodia elata | 13.700 | |
| SRR5643515 | five period of Gastrodia elata | 13.320 | |
| SRR5643524 | five period of Gastrodia elata | 13.810 | |
| SRR5643525 | five period of Gastrodia elata | 29.710 | |
| SRR5643528 | five period of Gastrodia elata | 16.690 | |
| SRR5643658 | five period of Gastrodia elata | 32.820 | |
| SRR5643659 | five period of Gastrodia elata | 22.250 | |
| SRR5643660 | five period of Gastrodia elata | 21.280 | |
| SRR5643661 | five period of Gastrodia elata | 18.800 | |
| SRR5643662 | five period of Gastrodia elata | 15.760 | |
| SRR5643663 | five period of Gastrodia elata | 21.560 | |
| SRR5643664 | five period of Gastrodia elata | 19.970 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 22.970 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.570 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 22.020 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 26.270 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 29.790 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 32.360 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 26.690 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 29.180 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.240 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 21.430 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.130 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.130 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 21.05 |
| Juven | Juvenile tuber | 14.68 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 13.63 | |
| Mother_Juven | Mother tuber of Juvenile | 7.76 |