Detail information of GWHGAAEX003384/evm.TU.scaffold_134.28
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|83590824|ref|YP_430833.1| | 4.00E-23 | heavy metal translocating P-type ATPase [Moorella thermoacetica ATCC 39073] |
| KOG | KOG0207 | 5.00E-65 | Cation transport ATPase |
| nr | gi|672128001|ref|XP_008787478.1| | 1.96E-81 | PREDICTED: probable copper-transporting ATPase HMA5 isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q9SH30|HMA5_ARATH | 2.00E-65 | Probable copper-transporting ATPase HMA5 |
| trEMBL | tr|M5WZ60|M5WZ60_PRUPE | 4.00E-77 | Uncharacterized protein {ECO:0000313|EMBL:EMJ12105.1} |
| TAIR | AT1G63440 | 5.00E-65 | heavy metal atpase 5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000139 | 771115 | 774967 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003384
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00403.25 | HMA | 40 | 101 | 2.50E-14 |
| PF00403.25 | HMA | 119 | 179 | 8.40E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K17686 | copA, ctpA, ATP7 | MAPK signaling pathway - plant | map04016 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030001 | Biological Process | metal ion transport |
| GO:0005507 | Molecular Function | copper ion binding |
| GO:0046872 | Molecular Function | metal ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.430 |
| SRR2545915 | Juvenile tuber | 0.560 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.290 |
| SRR5643514 | five period of Gastrodia elata | 0.970 | |
| SRR5643515 | five period of Gastrodia elata | 3.060 | |
| SRR5643524 | five period of Gastrodia elata | 1.190 | |
| SRR5643525 | five period of Gastrodia elata | 0.770 | |
| SRR5643528 | five period of Gastrodia elata | 0.370 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.300 | |
| SRR5643660 | five period of Gastrodia elata | 0.650 | |
| SRR5643661 | five period of Gastrodia elata | 0.160 | |
| SRR5643662 | five period of Gastrodia elata | 0.820 | |
| SRR5643663 | five period of Gastrodia elata | 0.120 | |
| SRR5643664 | five period of Gastrodia elata | 0.300 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.390 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.470 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.940 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.790 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.520 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.770 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.710 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.370 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.190 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.610 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.75 |
| Juven | Juvenile tuber | 3.09 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 66.45 | |
| Mother_Juven | Mother tuber of Juvenile | 132.31 |