Detail information of GWHGAAEX003385/evm.TU.scaffold_134.29
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|212639055|ref|YP_002315575.1| | 0 | cation transport ATPase [Anoxybacillus flavithermus WK1] |
| KOG | KOG0207 | 0 | Cation transport ATPase |
| nr | gi|672127999|ref|XP_008787477.1| | 0 | PREDICTED: probable copper-transporting ATPase HMA5 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9SH30|HMA5_ARATH | 0 | Probable copper-transporting ATPase HMA5 |
| trEMBL | tr|F6HUD3|F6HUD3_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB58356.1} |
| trEMBL | tr|F6HUD3|F6HUD3_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB58356.1} |
| TAIR | AT1G63440 | 0 | heavy metal atpase 5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000139 | 774974 | 814785 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003385
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00122.19 | E1-E2_ATPase | 226 | 415 | 6.40E-49 |
| PF00702.25 | Hydrolase | 433 | 655 | 2.00E-44 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K17686 | copA, ctpA, ATP7 | MAPK signaling pathway - plant | map04016 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006812 | Biological Process | cation transport |
| GO:0030001 | Biological Process | metal ion transport |
| GO:0046872 | Molecular Function | metal ion binding |
| GO:0019829 | Molecular Function | cation-transporting ATPase activity |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.730 |
| SRR2545915 | Juvenile tuber | 1.430 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.050 |
| SRR5643514 | five period of Gastrodia elata | 4.000 | |
| SRR5643515 | five period of Gastrodia elata | 4.150 | |
| SRR5643524 | five period of Gastrodia elata | 4.290 | |
| SRR5643525 | five period of Gastrodia elata | 5.700 | |
| SRR5643528 | five period of Gastrodia elata | 6.010 | |
| SRR5643658 | five period of Gastrodia elata | 5.620 | |
| SRR5643659 | five period of Gastrodia elata | 2.360 | |
| SRR5643660 | five period of Gastrodia elata | 2.890 | |
| SRR5643661 | five period of Gastrodia elata | 3.280 | |
| SRR5643662 | five period of Gastrodia elata | 2.350 | |
| SRR5643663 | five period of Gastrodia elata | 1.940 | |
| SRR5643664 | five period of Gastrodia elata | 1.660 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.260 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.230 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.220 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.530 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.600 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.490 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.390 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.050 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.970 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.270 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.620 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.620 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.61 |
| Juven | Juvenile tuber | 3.36 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 142.28 | |
| Mother_Juven | Mother tuber of Juvenile | 133.69 |