Gene detail

Detail information of GWHGAAEX003388/evm.TU.scaffold_134.32

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|521459603\|ref\|YP_008153931.1\|	1.00E-41	ATP-dependent helicase [Sorangium cellulosum So0157-2]
KOG	KOG0926	0	DEAH-box RNA helicase
nr	gi\|672143827\|ref\|XP_008795799.1\|	0	PREDICTED: probable ATP-dependent RNA helicase DHX37 [Phoenix dactylifera]
Swissprot	tr\|Q38953\|DHX8_ARATH	8.00E-57	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBL	tr\|C5XZ91\|C5XZ91_SORBI	0	Putative uncharacterized protein Sb04g028590 {ECO:0000313\|EMBL:EES07295.1}
TAIR	AT1G33390	0	RNA helicase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000139	858825	869558	-

Transcript Sequence
>GWHTAAEX003388 ATGATAGGAAATGACTGCTCAATCAAGTTCATGACTGATGGCATTTTACTTCGAGAAGCACAGAGTGACTTTCTATTGAAGCAGTACTCTGTCATTATCTTGGATGAGGCTCATGAAAGGAGCTTAAACAGCGATATCCTCATTGGCATGCTGTCTCGGATCATTAAAATACGTCAAGAATTATATGAGGATCAGCAAAAAAAGATATTATCCGGTGCCAAGATTAGCCCTGAAAAATTAGTTTCAAGATTAAAGCTTGTGCTGATGAGTGCCACGCTTCGGGTAGAAGATTTCATTTCCAATAAGAGGCTGTTTCATGAGTCACCGCCTGTTTTGGAAGTTCAAGTTAGGCAATTTCCTGTCACTATTCACTTCTCAAGGAAAACTCCTGACGACTATCTAGGGCATGCCTATAAAAAGGTTTTGTCAATTCATAAGAGGCTTCCACCTGGCGGCATACTTGTGTTTGTCACTGGACAAAGGGAAGTAGAGTACTTGTGCAAAAAATTAAGGAAGGCTTCTCAAAAGTTTTTGGAGAAGAGTATAAAAGAGAAGATGGAAAATGAGATCACTGCAGGGCCTGAACTTGACATGAAGGACATTGACGAGGCTTTTGGGTTGGAAAATAATTTCACCGAAACAGACCAGTTCTGCACCTATGAAAAAGATGATTTTGAAGAGAATGAACATTTTTCAGAATCAGAGACGGACAGTGCATCGGCTGAGGATAGTGAAAATGAAGGCTTTGAGAAGACAGATGAACAATTGGAAAGTGGTTTAGTGCTGGAATTTTTAAAAAATCCCCACAGTCTTTCTTCGTTGAAGACTGCATTTGAAGCCCTGGGTGGAAACAGTTCCAATCAAACAGGAGAAAAGCCAAATCTTGAAACTGCTTCGCAGATTAAAGAATCTTCTTCAGATTCAACTGCTACAGTTGGGCCATTGTATGTTTTACCACTTTATGCAATGCTCCCTGCTTCTGCTCAGCTTCGTGTTTTTGAGAAGGTGCCGGAGGATGAACGCCTTGTAATTGTTGCTACTAATGTTGCCGAGACTTCCTTGACAATCCCAGGCATAAAATACGTTGTTGATAGTGGAAAGGAGAAGGTTAAGAACTACAATTGTGGCAATGGCATGGCAAGTTTTGAAGTTCAGTGGATAAGCAAAGCATCGGCTGCTCAGCGAGCCGGGAGAGCTGGGAGAACCGGACCTGGCCATTGTTATCGTCTTTACTCTTCAGCAGCATTCAGTAAAGACGATATCTTCCCTGAGTTTTCCTGCCCTGAGATTTCCAAGATTCCAGTTGATGGTGTTGTGCTTCTAATGAAGTTTATGGGAATTGATAAGGTTGAAAATTTTCCTTTCCCTACACCTCCCAAGGCCTCAGCACTGAAAGAAGCTGAGCTGTCTTTGAAAGCCGTTGAGGCTCTTAATGAGGAGGGCAAGATAACACCATTGGGAAGGTCGATGGCACATTACCCTATGAGCCCGCGTCACTCTCGTATGATCCTCACAGTGATTGAGATTTTAAGCAATCAGGCCAGATTTGTTCGTTCAAATCTTGTGCTGGGATATGCTGCAGCTGTTGCTGCAGCTCTAAGCTTTCCGAATCCCTTTATTCTACTCATGGAAGATAGTAGTGGGACTGTAAAAGATGATGCTGATAAAAAATTAGAGATACATGATTATGAGAAGGCTTGGGATAATCAGGAAAAACTGAGACTGAAGAAGATGAAAGCAGCAGCAATAATGTCTCGTGCCAGATTTCTCAATCCGAGCAGCGATGCACTAACTGTTGCTTATGCTCTGCAGCTATTTGAGCTTGCAGAAAACCCATTCGAGTTCTGCAGAAGCAACTCCCTTCACCTGAAGACCATGGAAGAGATGTCCAAACTAAGGAAACAAATAATTCAGTTAATATTTTATCATAACAATAATGGCAGCTCCAAGGATGTCGAGGCTGCCTGGCAGGTTCATTCCGACAGGCATCCCCTAAAACTGAATGAAGAAGAGCTTCTGGCTCAAGCTATATGCGCCGGGTGGGCCGATCGGGTCGCAAAGAAAACAAAAACCGTTTTCTCGTTATCTTCAGAGAAGGAATTAAAAGCTCGTCAGGTTATGAGGTACCAGTCTTGTGCCATTGATGACACGGTTTATCTCCATCGTCGATCCTCCGTTGCTCAGACAGCTCCTGAAACTGTTATCTACAATGAACTTCTCTGCACGAATAAGCCATATATGCATGGAGTAACTGCGGTTAAGTCAGATTGGCTGGTAAGATATGCCAAATCTCTCTGCTGTTTTTCGGCTCCTCTTGCCAATCCAAGGCCTTATTATGAGCCTTTGAGTGATAATGTATTTTGCTGGGTGAGCCCAACTTTTGGCCGGCATAACTGGCAGCTTCCATTACACTGTTTTCCCTCCAAAAATGAAATTTTGCGAGCTTCTGTGTTTGCTTGTGCGCTGCTTGAAGGGAATGTTTTGCCATGTCTTAAAAATGCTAAGCATTTCTTGGCTTCAACTCCATCAATTCTGCTGAAAACTGAGGCATTGGGGCAGAGAAGGGTGGGAGATCTGTTGAGCAGGTTGAGGATGGGCTCTATAAAAGTGGACAGCCGGGCTAAGTTGAAAGAAGCTTGGGATGAGAATTCTATGTTTCTGTATGTGGAACTCAAGAATTGGTATCAGGAGAAGTTTCATAGTCAGTTTGAGAAAGTGTGGGGACAGCTGCTCCAAGAAGCTCAACTTGAAGGCTCTGACCTTTTTCCAAAGAGAGCAAAGAAGAATAGTAGGAAAATCGCATGA

Network for GWHGAAEX003388

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00271.30	Helicase_C	317	403	3.10E-10
PF04408.22	HA2	467	598	4.00E-17
PF07717.15	OB_NTP_bind	673	764	8.10E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0004386	Molecular Function	helicase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	60.800
SRP064423	SRR2545915	Juvenile tuber	64.640
SRP108465	SRR5643513	five period of Gastrodia elata	54.490
	SRR5643514	five period of Gastrodia elata	49.480
	SRR5643515	five period of Gastrodia elata	41.970
	SRR5643524	five period of Gastrodia elata	43.280
	SRR5643525	five period of Gastrodia elata	57.150
	SRR5643528	five period of Gastrodia elata	51.690
	SRR5643658	five period of Gastrodia elata	62.200
	SRR5643659	five period of Gastrodia elata	57.800
	SRR5643660	five period of Gastrodia elata	61.180
	SRR5643661	five period of Gastrodia elata	53.550
	SRR5643662	five period of Gastrodia elata	68.220
	SRR5643663	five period of Gastrodia elata	68.910
	SRR5643664	five period of Gastrodia elata	81.670
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	59.050
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	66.010
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	59.850
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	70.250
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	60.150
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	62.470
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	65.110
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	57.520
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	48.080
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	51.040
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	46.490
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	46.490
SRP279888	Gastro	Gastrodia elata tuber	86.20
	Juven	Juvenile tuber	81.75
	Mother_Gastro	Mother tuber of Gastrodia elata	57.07
	Mother_Juven	Mother tuber of Juvenile	54.82