Gene detail

Detail information of GWHGAAEX003393/evm.TU.scaffold_134.38

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672177818\|ref\|XP_008809016.1\|	2.18E-102	PREDICTED: uncharacterized protein LOC103720851 [Phoenix dactylifera]
Swissprot	tr\|Q9LS48\|SG1_ARATH	7.00E-81	protein SLOW GREEN 1, chloroplastic {ECO:0000303\|PubMed:24420572} (Precursor)
trEMBL	tr\|W1PP40\|W1PP40_AMBTC	2.00E-85	Uncharacterized protein {ECO:0000313\|EMBL:ERN09574.1}
TAIR	AT3G18420	2.00E-80	Protein prenylyltransferase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000139	1038502	1044972	-

Transcript Sequence
>GWHTAAEX003393 AAACAATATTTTTTGCTGCTCGTCACCAAAGCCAGCTGAAGGGAGAGAGGGAGAGAGGGAGAGAGGGGAGAGTAGCCGAAAGTTGCAAACCCTAGCCGCAAGTGTGACACCTGCAATACCTCCGTCGCAATGGAATCCTTCGCCACAACCACGTATGGCCACCAGCTCTTCTTCTCCCCCTCCCTCGCAAAACACCAATTATACCCTAAACCGAGAGCCCTGCGCTTCTCCTTTCGCTCGCACTCGAAATCCAAGTCCTCCACAATCATCTCTGTGAAAGCCGCCTCATCCTCAGAATCCAAATCCCATTTCATAGCCCGCAGAATCAAGACAATCGCCGCCGGCGCATTCATTCTTTCTGCCGCAACCGTCAGCGCGCTATCCGGACGTCTTCCTCCAGCAATTGCAGATGCTGCCACTCCATCCCCTCTCTCCGTTCTTCTCGAATCCAATTCCGAAGCCGTCGACGCTCTCCGCTCCATGGTCTACGAGAAACTGGAAAAGGGCGAGGACGCAGAGGCGCTTCCGATCCTCCGCAGGCTGTTGGAAGCTCAGCCTTCGGAGATGGAGTGGAAGTTCTTGACTTCAAGGCTGCTCAACGAGATGGGCCAAACGGGCGAGGCGCGCAAGCTTCTAGAAGAAATCCTCGCCGTCGATCCCTTCTCCTTCAATGCCCTCTTCCAGTATGCCATTCTGATGAGCCGTTGCGGCGACGGCGCCGCCGCACTCGAGCATCTTGAGCGCTCCTTGGAGCTCGCTCGAACCGAGCGCAAGGAAGATGCCGCCCGAGACGTGCGCCTCATCATCGCGCAGATCCTCTACCTTCAGAAGAACGTCGAAGCGGCCCTCTCTGCCTACGATGCTCTCGCAAGGGAAGACCCGAAGGACTGCCGCCCTTTTTTCTGCCAGGGACTCATCTATTCTCTGCTCGATCGAGACAAGGAGGCTCGAGAGAAGTTTGCCATTTACAACGAACTCACCCAAGGGAACGCCGAGATGAATGCCTACTTGCAGACGCCCTTGTCGAGGCTCAGGCTCTTCGGAACTGATGATGATTTGGAAATGGAAAAAAGTGTGTGCTGAAGGTGGCTGGCCTTCCTATGACTATAATCTTAAAGAAGTAGTTTATGATCGTTCTAAGATGATCTCAAAGAACCTGTGAATCTATTCAGGACTGAAAACTCAACAAGTTGGGGAGACATGGAAAGCTGAAGTAGTTATAGGAAAGGCACATTTCATCAAATAATCATTTATCCAGCATGTGCATCCATCCAGATGAGGAAAGAACTTCTGTATTAGTATTGTTTGAGTGATATATATGTATATATCTTCTAAATTAGTTATGTAAATGATTTGTATTAACTTGGTCCTATGAGTAAGTTGAGTGTGCCCAAATGAATTTAATTGTACAAGGCTACAAGAACATTTTTGTTACAGCAGATTGCATAATAAGTTTCTCAAATAAGTACTTTTTTCTTATAGCAGTTTGACTAAGGAATTTTATTTTTAGTATAGAAGGTTCTTAGGAAATTTTGTTAAATCTGCTAAATAAGTTTGTATAGGCTGCCCTTCTATTAGTCTGATGCATTTCTT

Network for GWHGAAEX003393

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13174.5	TPR_6	221	252	0.18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.790
SRP064423	SRR2545915	Juvenile tuber	27.440
SRP108465	SRR5643513	five period of Gastrodia elata	26.260
	SRR5643514	five period of Gastrodia elata	28.650
	SRR5643515	five period of Gastrodia elata	25.570
	SRR5643524	five period of Gastrodia elata	24.070
	SRR5643525	five period of Gastrodia elata	29.350
	SRR5643528	five period of Gastrodia elata	25.110
	SRR5643658	five period of Gastrodia elata	28.920
	SRR5643659	five period of Gastrodia elata	30.210
	SRR5643660	five period of Gastrodia elata	34.570
	SRR5643661	five period of Gastrodia elata	40.450
	SRR5643662	five period of Gastrodia elata	47.810
	SRR5643663	five period of Gastrodia elata	41.270
	SRR5643664	five period of Gastrodia elata	50.130
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	42.370
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	64.370
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	48.100
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	45.450
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	40.780
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	35.600
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	49.640
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	41.420
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	45.720
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	46.760
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	40.830
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	40.830
SRP279888	Gastro	Gastrodia elata tuber	54.30
	Juven	Juvenile tuber	47.45
	Mother_Gastro	Mother tuber of Gastrodia elata	20.97
	Mother_Juven	Mother tuber of Juvenile	25.73