Gene detail

Detail information of GWHGAAEX003398/evm.TU.scaffold_134.44

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2939	5.00E-122	Uncharacterized conserved protein
nr	gi\|672173849\|ref\|XP_008807064.1\|	0	PREDICTED: coiled-coil domain-containing protein 132-like isoform X1 [Phoenix dactylifera]
trEMBL	tr\|C5WTG6\|C5WTG6_SORBI	0	Putative uncharacterized protein Sb01g030070 {ECO:0000313\|EMBL:EER94548.1}
TAIR	AT2G27900	5.00E-122	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000139	1256268	1338865	+

Transcript Sequence
>GWHTAAEX003398 AAAAAATAGTTGAAATACATTTGGAGAATCGAGTTAGCATCAAAAGGAGTAGCGAGTTAGCATCAAAAGCAGTCGCGCTTGAAAAAGCTTGTTCAATCAAATTCCCGTGTCGTGTGATTTGCACGTCTCGGACAAGCTTTTGTAAATTGGAACCCCAAATCTTCATCTTCCGGTCCTCTGCACCGAAGCCTTGATAATTGCACCGAGTTTCTGCTGAATAATCGATTCTGACGCGACAGGTTCAGATGGCTGATCTTACCATTGCCGCTCTCGAGAGCTAAGCGATGCAGCAGGAATCGTCGGGCGACGGCGGTCAGTCTGTTCATGAGTTGGAACCCCCGGGTCCGCTGTTATTCCTTCCATTGCTGTTCCTACAGGGTGGCGGTATGGATCTCTCGAGGATCGGAGAGAAAATTTTCAGCTCCATGCGTTCTGCACGCTCACTGGGTCTCATTCCCTTTATGTCCGATCGCCCCGAGGTTCCTGAAAGGGCAGCAGCGGCTGCTGCTGCCGCTCGAGCTCTTGTGGGACTCCCCCCACATGAAAGGATTGCCCTTACATCAAGTTCAGGGGAATTTACTTCCTTGTATGTTAGAAAGGACCAAACCCTTGATGAGCTTGAAGAAGAGTACTACGAGGAGGATTTCGATCCTGTTAAGTATATTTTGGAGCACATCCATTCTGAAGAAAGTGATGCTGCATATTTTGAGAAGATGGCCATTCGTAGGTTAGCACAGCTTGATAAGATAGCTGAACGCTTATCATGCCATGTTGTGGAGCACCATAAAGAATTGGTGAAGGGAATGGAACTTGTAACGGAGCTACAGCAGGATTTGAAGGTTGCAAATGTCATTTGCATGAATGGGAGAAGACACATATCTTCTTCCATGCATGAAGTTTCGAGGGAACTTGTTGTCCATTCAAGTGCAAAAAAGAAGCAAGCTTTGCTGGACATGCTTCCAATTCTTACTGAACTTTGCCGTGCATTGGACATTCAAGTTGAATTGGAAAACCTTGCAGAGGAGGGAAACTATCTCCGGGCATTTGCTTTGTTACCTGAATATTTACAACTTTTGGATGGCTATTTAGAGCTTTCCTCTGTTAAAGAAATGATTAGTGGGATTGAGAATTGGTTAGAACGAACGCTTCAGAAGCTAGATACACTTCTATTAGGAGTTTGCCGAATTTTCAGAAAAGAGAGCTACATAACTGCGGTTGATGCTTATGCGTTGGTTGGTGATATTGCTGGTCTTGCTGAGAAAATTCAAAGTTTCTTTATGCAGGAAGTTCTAACAGAAACTCATTCTCTTTTGAAGGATATGGTGCTTGAGGATGTTGGAAATGAAGCACAGAAAAACAGATTCACCTACAGCGATCTCTGTGAGCAAATACCTGAATCAAAATTTCGGCATTGTTTGTTGGAAACATTGGGAAGCTTGTTTAGTTTGATGTGTTCATATTACACAATCATGAGTTTTAAGCCCAACAGACAGGATTTTGATTATCCAACGTCAAATACCACTTTGAAGAACATCAGTACTTCCCAGAGCTCCGAAGTAGTACCAAGTGATAGTGTGGCATACAGTTCAAGTGATTTTTCTGGGTTTGTGCCAAGAGTGATTGTTTCATCGTCAGTTAATTGTGATTCACAATGTTGTTTGCCTGCTGATGGTACGGCAGATAATCCTGGATCTACAGCATCAAGTTCATATGTGTATTCTGTAGATGCATGTGACATTAGTGCGTCCACATCAAGTTGTGATTCTCCTTTCTACCATTTAAGGAAAGATGCTGCTGCCTTTGTTTCACAAACTTTGGATAGAAGGCGTGAAAGCTTGTGGCAGCTTGCTACTAGCCGTACTTCTGTGCTACTATCATCTCCTTCTGTTTACTCGACTAGCACATTCCAATTTCTGCGGAACTACGAAGATCTAAATGTGTTTGTTTTGGCCGGTGAAGCATTCTGCGGATTACAAGCAACTGAGTTTAGGAACAGATTAAAAAGTATTTCTGAAAACTATGTTGCAGCATTTCACAGGCAAAATGTTTATGCACTTAAAATGGTGTTGGAGAAGGAGAATTGGATGCAGTTATCCGCAGAAACTATACAGCTAGTTAGTTTGGCTGGTCTTATTGGTGATGGAGCTCCCTTAATTGTTCCTTCTTCAAGCAATACATTGGCCGTCTCTGCAATTCTCAAGAAAAATTCGGGTGTGTCTGTCAATAGGAAGCAGAAAAATGGTTTTTCTTATTGGCTCAGTATGGATAATCCATTTTCTTCGAAGTTAGCAAGTGGTTCCAAAGAACTGTCAAATGTTCAGGCATTATTAGTTAATGGGACAGCAGCATCAGATTTAGTGGATACAAAAGTTGTTGCTGCAGATCACCAAAATGAACTTCCAGTAAAGGTGCATTATAATCATCATACAAATGGCAGAGACCCTGTTATAGAAGATGAAAACGAAGACCTGTTGGCTGACTTTATTGATGAGGACAGTCAACTTCCGAGTAGAAAATCAAATCATGTACACTCAAAAAACAGTTATACATGTTGGAAGGATGATGAGATATCTGCACAGACAGGTTCCTCCATTTGTTTATTGAGATTAATGGACAAATATGCGAGGCTAATGCAGAAATTGGAAATTGTTAATGCTGATATTTTCAAGGGCATCTGCCAGCTATTTGGGATATTTTATTATTTTATTTTCGAGGCATTTAGTCAACAGGACTCTAATCAAAGCGTAAAGTGCCAACCAGAGTTTCTATCATCACAACTTAAATCTTCTTTGTCAAAAATTGTTCAAGACTGTGATCAGTGGATTAGACCTCAAAATCAATCATTTTCTTCATCACCTAGATCAATGAATACGCCGCAAACACATATTGATATGATGCCTACAATTCCTTCCGGAGTTGTGCCCAGTACCACATTTGGACTGAAGGAAAGATGTGTTGCTGCTGAGACGATATCATTCGTTGCTCAAATCTTGCATAGATCCAAAGCTCATCTTCAAGCAATGTTGTTTCAACATAATGCTGCACTTGTTGAGGATTTCTTTGGGAATTTGGTGAATTCAGTTCCTTACCTAGTTGAACACATTCATAAGACAACTGCTAGGATACTTCTTCACATCCATGGTTATTCAGATAAAATAGCTAATGCTAAGTGGGAAGTTAAAGAGCTTGGACTAGAGCATAACGGATATGTTGATTTATTATTGGGAGAGTTCAAACATTATAAAACAAGGCTAGTACATGGCGGAATTACCAAGGAGGTTCAGGATCTCCTTCTAGAGTTCGGACTTGAGAATGTTGCAGAAGTGCTGACTGAAGGTCTGTCTCGAATTAAAAGATGTAGTGATGAAGGACGAGTGCTGATGTCTTTGGATCTTCAGGTTCTAATCAATGGGCTTCAACACTTTGTTTCATCGAATGTCAAGCCAAAGTTGCAGGTTGTTGAAACGTTTATCAAGGCGTACTATCTCCCAGAGACTGAATATGTGCACTGGGCACGTTCCCATCCTGAGTACGGTAAGAATCAAATTGTAGGGTTAGTGAGCCTGGTGGCAGCCATGAAAGGATGGAAGAGGAAGACCAGATTAGAAGTTCTTGAGAGGATTGAATCAGGAACCTAACTAGCTTTTTATCACCACAGGAGACGGAGACGAAGCTTGTTCGATATCGGGAGAAGCTTCTTCTCAAGCCTCTTCTTGTTCGACGAAGGAGAAGGAGATGAAGCTCGCTCGACCCGGAAGACGACATGAAGTAGATCTTTTGTATGGGTCGGTTCGCCTTATCGACTCCAAAAGATGAAGCTCATTAACTCGTTCAACGTCCGGAGAAGCCCGTTCATGCAGATCATTATTATGTTAGCCTATAGGTCTGAAAGGAGTGCTTTTAGGTAGCAAAGGCAAGTGAGGCACAAGCCGTTGCCTCATGAAGGAAATTTTAAAAGTGCTTGACAGAAATTATGCATGTTTTTATAATTTTTAGGAAATTTATTTTTGATATAACTTTTAAATTATTGCAAATTTATGATTATATTTATTTAAAATTTATATATAATAAAGTATTATGCCAA

Network for GWHGAAEX003398

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10475.8	Vps54_N	109	398	2.80E-89
PF10474.8	DUF2451	884	1114	2.50E-66

Protein Sequence

>GWHPAAEX003398
MQQESSGDGGQSVHELEPPGPLLFLPLLFLQGGGMDLSRIGEKIFSSMRSARSLGLIPFMSDRPEVPERAAAAAAAARALVGLPPHERIALTSSSGEFTSLYVRKDQTLDELEEEYYEEDFDPVKYILEHIHSEESDAAYFEKMAIRRLAQLDKIAERLSCHVVEHHKELVKGMELVTELQQDLKVANVICMNGRRHISSSMHEVSRELVVHSSAKKKQALLDMLPILTELCRALDIQVELENLAEEGNYLRAFALLPEYLQLLDGYLELSSVKEMISGIENWLERTLQKLDTLLLGVCRIFRKESYITAVDAYALVGDIAGLAEKIQSFFMQEVLTETHSLLKDMVLEDVGNEAQKNRFTYSDLCEQIPESKFRHCLLETLGSLFSLMCSYYTIMSFKPNRQDFDYPTSNTTLKNISTSQSSEVVPSDSVAYSSSDFSGFVPRVIVSSSVNCDSQCCLPADGTADNPGSTASSSYVYSVDACDISASTSSCDSPFYHLRKDAAAFVSQTLDRRRESLWQLATSRTSVLLSSPSVYSTSTFQFLRNYEDLNVFVLAGEAFCGLQATEFRNRLKSISENYVAAFHRQNVYALKMVLEKENWMQLSAETIQLVSLAGLIGDGAPLIVPSSSNTLAVSAILKKNSGVSVNRKQKNGFSYWLSMDNPFSSKLASGSKELSNVQALLVNGTAASDLVDTKVVAADHQNELPVKVHYNHHTNGRDPVIEDENEDLLADFIDEDSQLPSRKSNHVHSKNSYTCWKDDEISAQTGSSICLLRLMDKYARLMQKLEIVNADIFKGICQLFGIFYYFIFEAFSQQDSNQSVKCQPEFLSSQLKSSLSKIVQDCDQWIRPQNQSFSSSPRSMNTPQTHIDMMPTIPSGVVPSTTFGLKERCVAAETISFVAQILHRSKAHLQAMLFQHNAALVEDFFGNLVNSVPYLVEHIHKTTARILLHIHGYSDKIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLVHGGITKEVQDLLLEFGLENVAEVLTEGLSRIKRCSDEGRVLMSLDLQVLINGLQHFVSSNVKPKLQVVETFIKAYYLPETEYVHWARSHPEYGKNQIVGLVSLVAAMKGWKRKTRLEVLERIESGT

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	32.860
SRP064423	SRR2545915	Juvenile tuber	23.250
SRP108465	SRR5643513	five period of Gastrodia elata	13.510
	SRR5643514	five period of Gastrodia elata	15.120
	SRR5643515	five period of Gastrodia elata	13.610
	SRR5643524	five period of Gastrodia elata	13.110
	SRR5643525	five period of Gastrodia elata	16.150
	SRR5643528	five period of Gastrodia elata	16.380
	SRR5643658	five period of Gastrodia elata	19.340
	SRR5643659	five period of Gastrodia elata	13.680
	SRR5643660	five period of Gastrodia elata	15.360
	SRR5643661	five period of Gastrodia elata	13.230
	SRR5643662	five period of Gastrodia elata	13.570
	SRR5643663	five period of Gastrodia elata	14.630
	SRR5643664	five period of Gastrodia elata	14.940
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.700
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.680
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.640
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	16.870
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.330
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	16.770
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	14.750
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.840
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.630
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.970
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.460
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.460
SRP279888	Gastro	Gastrodia elata tuber	16.61
	Juven	Juvenile tuber	20.96
	Mother_Gastro	Mother tuber of Gastrodia elata	16.82
	Mother_Juven	Mother tuber of Juvenile	22.54