Gene detail

Detail information of GWHGAAEX003404/evm.TU.scaffold_134.51

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2956	3.00E-98	CLIP-associating protein
nr	gi\|743776842\|ref\|XP_010918834.1\|	0	PREDICTED: CLIP-associated protein-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q8RWY6\|CLASP_ARATH	0	CLIP-associated protein
trEMBL	tr\|A0A067JR47\|A0A067JR47_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP26431.1}
TAIR	AT2G20190	3.00E-98	CLIP-associated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000139	1605275	1647576	+

Transcript Sequence
>GWHTAAEX003404 ATCGAATTTAGGTGTTGAAACTTAGAAACTTCAAAAGCAAGAACTTCGAGTGGCACAGAGATAATTAAAATGCTGAGGTAAGTGCGTCGACAGCGCAGAGTCGCTACTGCACTCCCCAGTTGAAGCGCAGGGTTTCCCCACCGAAGTTCATCCGTCTTTCTTCCTCAATAATTCGTTTTCTCCGACCGAATTTGTTCTGCAACTGTTTGTGATTCTGAGGAAGACGATCCAATCCAGATCTAAAACCACCGCTAGGGTTTTTTGTTACTCTTGTCGATTGAGATGGAGGCGGCGCTGGAGATGGCGAGGGCAAAGGACACGAAGGAGCGCCTTGCGGCAGTGGAGCGGCTTCACCAGTCACTGGAGTCGTCCCGGAGGAGTCTCTCCTCAGGCGAGGCCACGGCGCTCGTCGATTGCTGCATGGATCTATTGAAGGATAACAACTTCAGAGTATCGCAAGGCGCACTGCAGGCACTCTCATCTGCCGCAGTTCTTGCTGGAGAGCATCTTAAAATCCATTTTAACGCTATTGTTCCTGCGGTCGTCGAGCGTCTTGGCGATGGCAAGCAACCCGTCCGTGATGCCGCAAGGCAACTCCTCATCACGCTTATGGAGGTTTCCTCACCAACAATTATTGTTGAAAGGGCTGGGAGTTATGCCTGGACTCATAAAAGCTGGAGAGTTCGGGAAGAGTTTTCACGTACGGTGGCCACAGCAATTGGCCTCTTTGCTTCCACGGAACTCACCTTGCAACGTGTTTTGCTCACCCCAGTCTTGCAGCTGCTTAATGACCCAAATAATAGTGTTAGAGAAGCTGCTGCTTCGTGCATAGAGGAGGCATACTCTCACGCTGGACCTCAATTTCTTGAAGAGCTTCAACGCCATCATCTTCCATCACCTATGATGAAGGAGATTAATTTTAGACTAGAAAGAGTTCAACCAAAGGCTCAATTATCAGATGTTGCTGGAAATCATTTTGCATATACTGAAATGAAATTATCTAATGCTAATCAAAGAAAAGCCAGTCCGAGGACTAAGGTTACTCGCAAGGATTCTTCGCTTTTTGGAGGTGAAGCTGATGTCACTGAGAAGCCTGTAGAACCTATTAAGGTGTATTCTGAGAAGGAACTCTTCAAGGAAATTGAAAAGATTATCTCCACTTTAGTACCTGATAAGGATTGGTCGCTTAGAATCTCATCCATGCAGAGAATTGAAGGCTTAATTTATGGAGGCGCAGCAGAGTACCCATCCTTTTTTGCGCTCTTAAAGCAGCTTGTTCCTCCTTTATGTACTCAACTGTCAGACAGACGATCAAGCATAGTGAAACAGGCCTGCCATCTGTTATGCTTTTTATCCAAGGAACTTTTGGGAGAGTTTGAGGCTTGTGCAGAGCTGTTCATTCCGGTTCTGTTTAAGCTTGTTGTAATAACCGTTCTAGTAATAGCAGAATCCGCAGACAACTGCATAAAAACGATGCTGCGGAACTGCAAGGTCGCTCGTGTTCTTCCACGCATTTGTGATTCTGCCAAGAACGACCGAAATGCGGTTCTTCGTGCCAGGTGTTGCGAGTACGCAATTCTGATCTTGGAATTCTGGGCCGATGCTTCAGAAATACAAAAATATGCGGATCTTTATGAAGATCTTATAAAATGTTGTGTTGCTGATGCAATGAGTGAGGTTCGATCAACTGCAAGAACTTGTTACCGAATGTTCTCAAAAACTTGGCCAGAACGTTCTAGACGTCTGTTTCAATCATTTGATTCTGTTATACAAAGGTTAATAAATGATGAAGATGGAGGTATGCATAAAAGATATGCATCTCCATCACTACTTGAGGGAGGATTTCAGCTTGTACAATCGTCATCTCATACATCTACTTCAAATTTACCTGGATACCGTCCAACAGCATTTGTTGCAATGGATAAAGGTCCTAGTGTTGCTTCGAGGGAGCCACTTTCTGCAGGCAGTCATGCTTTATTACAAGTTAGGCCACTTGAAAAATATTCTGAAAGAAGTCTTGAAAGTGTGCTTAATTCAAGCAAGCAGAAAGTTTCAGCCATTGAAAGCTTACTGCGAGGTGCTAACATATCTGGGAAAGAAAAGAATTCTGGTGCACATTCGTCCAGTTTGAACTTTGGAGTTGATCATCCAGTTACCCATGACTTAACTATTTCAGCAGCTTTCCCAGCAACGAATCATATTTTTCCACATAAGTCAGCAGCGTTGATTGATTCAAACATAGCTAACATATCTAGAGGCGATGCTAGGAATGGCGGTTCAAGTTTAGCTCATGTTGTACATTCTCAGAGCGAAGCTTTTGGAGATCATATTTCTTATGACAGTTTACCAACCGATTCACTGTCTGGGTTGTCATTGCCTCACATTATCAGAAAGTATTCTGAAAAGCACATTGACGGAAACAATTTGGAACCTAGTATTGATACTGGACTTAAGAGACTTTCAAATATGCAGTTTGATAGACATTTTAGTGATTCACATTATAGTGATACTGACTTGAGGGATCCTTACAATAATTATGTTCCTAATTTTCAAAGACCGCTTCTGAGGAAGCAAACCACTGGAAGGTCATCAGCAAGTGGAAGAAATAGTGTTGATGATAGTCAACTTCAAGCGGGCCAATGGTCCAATTATGTGGATGGTCCAACATCTCTTGGTGATGCTCTTGCTGATGGTCTGAGCTCCACTTCTGATTGGGTGGTTAGGGTATCTGCTTTTCACTATCTGCAGAATTTGTTGCTGCAAGGGCCAAAAGGTATACAGGAAGTCACACAGAGCTTCGAGAAGGTCATGAAGCTGTTCTTTCGACACCTGGATGATCCTCACCATAAAGTTGCACAGGCAGCCCTTTCTACTCTTTCTGAGATTATACCCGCATGCCGAAAACCTTTCGAAAGCTATCTTGAACGGATCTTGCCATATGTGTTTTCTCGATTAATTGACCCAAAAGAGTTGGTTAGACAGCCATGCAGAACAACCTTAGAAATTGTTGGCAAAACTTATGGTATTGATTCTCTACTACCTGCTCTTGTCCGTTCGTTGGATGAACAGAGATCACCCAAGGCTAAATTGGCTGTTATTGAATTTGCAAATAATTCTTTTAGCAAACATTCGTCAAACCCTGATGTCTATCTTAATAGTGGTTTCCTTAAATTATGGCTTACTAAATTGGCACCTTTAGTGTTTGATAAAAATGCTAAATTAAAGGAAATTTCTACATCTGGAGTTTTATGTGTGTATAATTACTTTGATTCAGCTGCTGTCCTTAATTTTATTCTTAGCTTGTCAATTGAAGAACAGAATTTATTAAGACGAGCACTTAAGCATTATACTCCTCGTATAGAGGTTGATCTAGTGAATTTCTTACAAAACAAGAAAGAAAGGCAACGCACAAAAACAAATTATGATCAGGCAGATGTTGGGACTTCATCTGATGATGGCTACAATGGGGTGTCAATGAGGAATCCGTATCTTGGAAGGCATTCAGGAGGTTCATTTGATAGTGAAAGTGGAAGGAAATGGAGTTCTATGCAAGAATCAATTATTGTTGATACTTCAATTGCTCAAGGATCATCAGATGAAATCCAACAGCCATATCTAAACATTGACCCAGGTTCTGATAATGAGATTCTCGGCCCCCAAAGTAGAGAACTGAGGCGCAGTGTGGGCACTGCTTTTGAAACTAATATATTTATGAAGGATAGCTCTGTAAATTCTAACACTTTTATTGATAATGAGAATTGCATAACTACTCCAAGAATTGATATCAGCAGACTGGCTTGTTCTGATGGTTCTAAGGGAATTCAGTCAAGCAGGGATAGCATTGATGATTTAGGGATTATTCATGACAAATTTAGTTCTTTTAGGAGCAATGCTCAGGCTGATAATGGAATAAGCATTCCACAAATAATTTACCTTATATGCAACCGCAGTGATGATAAATCAAGGTTCCATAAATGTGAAGCCTTGCAAAAGTTGGCTGAAGCGTCTGTTACCAATGATATCTCAGTTTGGTCCAAGTACTTCAATCAAATATTAACAGCAGTGCTAGAGGTAGTGGATGATCCTGATTCTTCCACAAGGGAGCTTGCTCTTTCTTTGATCGCTGAAATGCTCAGTAATCAGAAAGAGATGATGGAAGATTCTGTCGAAGTGGTGATTGAAAAATTGCTCAGTCTGTCCAAAGATGCCAATTCTAAGACGACGAGCGAGGCGCAGCGATGCTTGGCAATCTTGCTGTCACTATATGACCCATTAAGATGTCTCGCTGTTGTTACACCCATGCTTGTCAGCCAGGATGAAAAGACAGTTGTTACTTGCATCAACTGTTTAGCCAAGCTGGTGGGTAGATTTTCGCAGGAGGAGCTGATTTCTCAGCTGCCATCATTTCTACCCTCCCTCTTTGAGGCCTTTGGAAACCAAAGCCCGGACGTTCGAAAGAGCGTGGTGTTCTGCTTGGTGGACATGTACATCCTGCTGGGCAAGCCGTTTCTTCCGTTCCTCGTCGACGGCCTGAGCAGCACTCAGCTCCGCCTGGTGACCATCTATGCCAACCGCATCTCTCAGGCCAGATCAGGTTCTAAGATTGATTGATTGTTTGATTTATGTTTTTATTTTCCTCAGTTTTAGCATTTGCTTTTTTGTTATGCTTTCCATTGAGGGGAGGATTGGGATTTTTGTATATTCGTTTCTGGCCGTTTTCTGTTATGAGAAAAATATGGTGATTTTTGCAAAGGTTTATTATTTATTTGTGATGGAAATCTTCTCGTTTTTACATTTCCAGCAACAGCATCTTGCCATTAAATCTTTTTAATGT

Network for GWHGAAEX003404

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02985.21	HEAT	160	185	0.00015
PF12348.7	CLASP_N	285	500	4.80E-53
PF12348.7	CLASP_N	807	999	5.80E-08

Protein Sequence

>GWHPAAEX003404
MEAALEMARAKDTKERLAAVERLHQSLESSRRSLSSGEATALVDCCMDLLKDNNFRVSQGALQALSSAAVLAGEHLKIHFNAIVPAVVERLGDGKQPVRDAARQLLITLMEVSSPTIIVERAGSYAWTHKSWRVREEFSRTVATAIGLFASTELTLQRVLLTPVLQLLNDPNNSVREAAASCIEEAYSHAGPQFLEELQRHHLPSPMMKEINFRLERVQPKAQLSDVAGNHFAYTEMKLSNANQRKASPRTKVTRKDSSLFGGEADVTEKPVEPIKVYSEKELFKEIEKIISTLVPDKDWSLRISSMQRIEGLIYGGAAEYPSFFALLKQLVPPLCTQLSDRRSSIVKQACHLLCFLSKELLGEFEACAELFIPVLFKLVVITVLVIAESADNCIKTMLRNCKVARVLPRICDSAKNDRNAVLRARCCEYAILILEFWADASEIQKYADLYEDLIKCCVADAMSEVRSTARTCYRMFSKTWPERSRRLFQSFDSVIQRLINDEDGGMHKRYASPSLLEGGFQLVQSSSHTSTSNLPGYRPTAFVAMDKGPSVASREPLSAGSHALLQVRPLEKYSERSLESVLNSSKQKVSAIESLLRGANISGKEKNSGAHSSSLNFGVDHPVTHDLTISAAFPATNHIFPHKSAALIDSNIANISRGDARNGGSSLAHVVHSQSEAFGDHISYDSLPTDSLSGLSLPHIIRKYSEKHIDGNNLEPSIDTGLKRLSNMQFDRHFSDSHYSDTDLRDPYNNYVPNFQRPLLRKQTTGRSSASGRNSVDDSQLQAGQWSNYVDGPTSLGDALADGLSSTSDWVVRVSAFHYLQNLLLQGPKGIQEVTQSFEKVMKLFFRHLDDPHHKVAQAALSTLSEIIPACRKPFESYLERILPYVFSRLIDPKELVRQPCRTTLEIVGKTYGIDSLLPALVRSLDEQRSPKAKLAVIEFANNSFSKHSSNPDVYLNSGFLKLWLTKLAPLVFDKNAKLKEISTSGVLCVYNYFDSAAVLNFILSLSIEEQNLLRRALKHYTPRIEVDLVNFLQNKKERQRTKTNYDQADVGTSSDDGYNGVSMRNPYLGRHSGGSFDSESGRKWSSMQESIIVDTSIAQGSSDEIQQPYLNIDPGSDNEILGPQSRELRRSVGTAFETNIFMKDSSVNSNTFIDNENCITTPRIDISRLACSDGSKGIQSSRDSIDDLGIIHDKFSSFRSNAQADNGISIPQIIYLICNRSDDKSRFHKCEALQKLAEASVTNDISVWSKYFNQILTAVLEVVDDPDSSTRELALSLIAEMLSNQKEMMEDSVEVVIEKLLSLSKDANSKTTSEAQRCLAILLSLYDPLRCLAVVTPMLVSQDEKTVVTCINCLAKLVGRFSQEELISQLPSFLPSLFEAFGNQSPDVRKSVVFCLVDMYILLGKPFLPFLVDGLSSTQLRLVTIYANRISQARSGSKID

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	33.190
SRP064423	SRR2545915	Juvenile tuber	29.720
SRP108465	SRR5643513	five period of Gastrodia elata	18.780
	SRR5643514	five period of Gastrodia elata	18.590
	SRR5643515	five period of Gastrodia elata	20.790
	SRR5643524	five period of Gastrodia elata	17.480
	SRR5643525	five period of Gastrodia elata	25.190
	SRR5643528	five period of Gastrodia elata	24.910
	SRR5643658	five period of Gastrodia elata	29.920
	SRR5643659	five period of Gastrodia elata	24.120
	SRR5643660	five period of Gastrodia elata	27.500
	SRR5643661	five period of Gastrodia elata	22.450
	SRR5643662	five period of Gastrodia elata	24.110
	SRR5643663	five period of Gastrodia elata	30.350
	SRR5643664	five period of Gastrodia elata	31.390
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.000
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.440
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	22.150
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	23.660
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	24.340
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	27.170
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	21.910
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	25.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.660
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	18.550
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	16.380
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	16.380
SRP279888	Gastro	Gastrodia elata tuber	32.97
	Juven	Juvenile tuber	33.19
	Mother_Gastro	Mother tuber of Gastrodia elata	20.60
	Mother_Juven	Mother tuber of Juvenile	31.49