Gene detail

Detail information of GWHGAAEX003405/evm.TU.scaffold_134.53

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|313672810\|ref\|YP_004050921.1\|	4.00E-22	wd40 repeat, subgroup [Calditerrivibrio nitroreducens DSM 19672]
KOG	KOG0772	0	Uncharacterized conserved protein, contains WD40 repeat
nr	gi\|743777051\|ref\|XP_010918944.1\|	0	PREDICTED: WD repeat-containing protein 70-like [Elaeis guineensis]
Swissprot	tr\|Q8H0T9\|KTNB1_ARATH	6.00E-08	Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255\|HAMAP-Rule:MF_03022}
trEMBL	tr\|M0T079\|M0T079_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P20500_001}
TAIR	AT2G20330	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000139	1649207	1656286	+

Transcript Sequence
>GWHTAAEX003405 ACTTGCTGACGTGTCATGTTAAAATTTTAGAAAAATTAGCCAAATTAAACTTTTATAATATAGAAGGAAAATTCAAGTAATTTCCATTTCTCAACGAACACTGCTATCAGTCGGGTAGAGGGCAGTGAGGGGAGGAGAGTATGGAGGGAGAGATGGACGAGGCGATGCGAGCGCACTTTCCGATGTCCTTCGGCAAGCCTTCGATGCCCCAACGCCGGCCCTCCTCCGTTCACTCAACTGCTCTGCGCACGTTTGAGCCATCAACCAACCGATCATCCTCCTCGTCCTTCACTAATCACGCAAAACCTAACCCTGACTCCCTGACCCGCCAGCCCGGCTTAGACGATGATGAAGAAGGCGATATAAAGATGCCGCTGCGATCAGAGGAGTCTTTTCAGACGGAACCAGATTCCGAAAAAGATGCGATGATAGGGCCTCCTCCGCCGCCTACATCGTCATCAGATAAGCTCCTTGTTGAAGACGAGGAGGAGGAGGAGATGATTGGTCCCCCGATGCCACCGCGGGCTCTTATGGATGACGGTTCTGATTCAGATTTGGATGACTCGCCGCTGGACGATAGGATTCGGATTCCTCTTAGCAACGAAATCGTGCTCAAGGGGCATTCAAGGGCAGTGTCAGCTCTTGCTGTGGATCATTCAGGATCGAGGGTGCTTTCTGGAAGTTATGACTACACAGTAAGAATGTATGATTTTCAGGGGATGACTTCGAAGTTGCAGTCTTTCAGACAGTTGGAACCTTTTGAGGGCCATCAAGTTCGGAGCTTAAGTTGGAGCCCTACGTCGGATAGATTTCTGTGTGTAACAGGTTCTGCACAGGCTAAGATTTATGATCGAGATGGACTTACCTTGGGCGAGTTCATAAAGGGAGATATGTACATACGTGATCTGAAGAACACAAAGGGCCATATATCTGGCTTGACTGGAGGAGAATGGAACCCTAAATCAAAGGAAACCATTTTAACCTCTTCTGAAGATGGTTCTTTACGTGTATGGGATGTTAATGATTTCAAAAGTCAAAAACAGGTCATCAAGCCTAAGCTTGCCCGGCCGGTGAGAGTTCCCGTTACAGCATGCGCGTGGGATTGCGAAGGCCGACGCATTGCTGGAGCTGCAGCCGATGGCTCCATACAGCTATGGAGCATCAAGGCTGGATGGGGCAGCAGGCCGGACGTGGTTGTGGAGAGCGGCCATACAGAGGATGTCAGCGGACTTAAATTCTCCTCGGACGGCCTGATCCTCTTGTCCAGAAGCATGGATGCTACGCTCAAGGTGTGGGATCTGCGGCAGATGAAGCTCCCCATCAAAATCTTCGACGGCATTCCCAATCATTACCCGCAAACGAACACCTCATTCAGTCCGGACGAGCGGCTGATCATCACCGGAACATCGGTCGAGAAGGACGACGGCGCAGGCGGAGGCGGCACGCTCTGTTTCTACGACCGGAGGAAACTCGAGCTCATCTCCAGAATCGGCGTCTCCCCTCAATGCAGCGTCATCCGCTGCGCCTGGCATCCCAAAATCAACCAGGTGTTTGCAACAGCGGGCGACAAGAAAGAAGGCGAGACACACGTACTGTACGATGCATCGATGAGCCAGAGGGGGGCGCTGGCGTGCGTGGGGCGAGCTCCGAGGAAGAAGTCGGTGGATGATTTGGAGGCGGAGGCGATCGTGCACAACCCGCACGCGCTGCCTCTGTTCAGAGAGCAGCCGAGCCGGAAGCGGCAGAGGGAGAAGATGCTGAAGGATCCGATGAGGTCGCACAAGCCGGAGCTCCCCGTCACCGGCCCAGGCTTCGGTGGTAGGGTCGGTACCACCAAGGGCAGCCTACTCACGCAGTACCTCATGAAGCAGGGCGGCCTGCTGAAGGAGACCTGGATGGAGGAGGACCCCAGAGAGGCCATTCTCAGGTACGCTGACGCTGCTGCCAGTGACCCCCTTTTAATAGCTCCTGCTTACGCTCAGACCCAGCCCGAACCCCTTTTCGCCCACCCCGATTCCGACGATGATGATCCCAGCAAATGATCCTCTGCGACTGATTTTCATATATTGGTGGTATGCATCATCAACCTATCCTCCTTTTCTTTTGTTGTTTCATGTGTTTGTTACAAATGCTCCAAAATTTTCCAAAAAAAAATCCATTTATTCAAATGATAAATTAGATTTTGTGCAATTCACTTTATTGTACTGCCAATATTTTTTCTATATCATATTTTTAATAATTTATCTCTTTAAATATAGAATAATTTAGAAAAAAAGTTTTTTTTTTTTTTTTAT

Network for GWHGAAEX003405

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	156	190	0.00012
PF00400.31	WD40	257	292	0.014
PF00400.31	WD40	355	386	0.0019

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	43.770
SRP064423	SRR2545915	Juvenile tuber	48.120
SRP108465	SRR5643513	five period of Gastrodia elata	46.070
	SRR5643514	five period of Gastrodia elata	46.300
	SRR5643515	five period of Gastrodia elata	39.960
	SRR5643524	five period of Gastrodia elata	44.640
	SRR5643525	five period of Gastrodia elata	51.830
	SRR5643528	five period of Gastrodia elata	41.880
	SRR5643658	five period of Gastrodia elata	64.990
	SRR5643659	five period of Gastrodia elata	48.370
	SRR5643660	five period of Gastrodia elata	47.980
	SRR5643661	five period of Gastrodia elata	56.920
	SRR5643662	five period of Gastrodia elata	47.700
	SRR5643663	five period of Gastrodia elata	45.220
	SRR5643664	five period of Gastrodia elata	56.050
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	64.640
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	61.120
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	58.260
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	75.060
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	58.980
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	71.690
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	70.120
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	61.710
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	53.720
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	56.830
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	55.610
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	55.610
SRP279888	Gastro	Gastrodia elata tuber	60.69
	Juven	Juvenile tuber	101.87
	Mother_Gastro	Mother tuber of Gastrodia elata	41.09
	Mother_Juven	Mother tuber of Juvenile	60.88