Gene detail

Detail information of GWHGAAEX003408/evm.TU.scaffold_134.56

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|343085920\|ref\|YP_004775215.1\|	9.00E-56	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
nr	gi\|743777027\|ref\|XP_010918931.1\|	0	PREDICTED: leucine-rich repeat receptor-like protein kinase PXL2 [Elaeis guineensis]
Swissprot	tr\|Q9M0G7\|PXL2_ARATH	0	Leucine-rich repeat receptor-like protein kinase PXL2 (Precursor)
trEMBL	tr\|A0A061DND1\|A0A061DND1_THECC	0	Leucine-rich repeat receptor-like protein kinase {ECO:0000313\|EMBL:EOX94314.1}
TAIR	AT4G28650	0	Leucine-rich repeat transmembrane protein kinase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000139	1679776	1683298	+

Transcript Sequence
>GWHTAAEX003408 GGAACATTGAAGTGAGGATTATTATATGAGCTTCCTATTTATATTTAGAAATAATTGGGTAGTACACGTAGAGAAAAAGACCCCACAAACACGTTCCATCCCCCACACATGCATTATTGTCGATAGATACTAAACTTAACCGATCGGCTATCGCCGGCTAGAAGCCCTGAAGTGAACTGAACAGTTGGCTGAATTTATCTTTGATCTCGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAAAAGGGCAATTAATGAGCAGAGTGTTGTTGCTCGCCCTCTTTTGGTCTCTGACAGTGCTCGTCTCCTCCAGCGGCAGCGTCATTGCCGAGCAAGAAGCATCCGCTCTGCTCACACTGAAATCCGGCCTCGTCGACCCCTTGGATTCTCTGGGAGACTGGAAACCTGCCGGGGCAGATCACTGCAACTTCACCGGAATCCGGTGCAATGCCGACGGCTTCGTGGAAGGCCTCGATCTTTCTCATAAAAATCTCAGCGGCGTCATCTCCTTCGATCCATTCCGGAGCCTCTCCGCCCTCGCCCACCTCAATCTCTGCTGCAATTCCCTCTCCGGATTCCTGCCCGAATCTTTCCCCTTCCTGACCGATCTCGAAGAGCTCGACCTCAGCGACAATAACTTCGAGGGCTCCTTCCCCTCCGGCATCGCCTCTTCCTTTCCCGGCCTGAGAATCCTCAACGCATCTGGAAACAACTTCGCCGGTCTTCTTCCCGTCGGGCTTTCCAATGCGTCTCTCCTCGAAACCCTAGATCTCCGCGGCGGATTTTTCACCGGCAAAATCCCGACCGGGTACAAGAATCTTCACAAGCTTAGATTCTTAGGGCTTTCCGGCAACAATCTGGGGGGCCGGATCCCGGCCGAGTTCGGGCAGCTGGCCGATTTGGAGACGCTCATAATCGGGTACAACGGGTTCGATGGGGCGATTCCGCCGGAATTCGGCAATCTCACCGATTTGCGCTACCTCGACATGGCGGTGGGAAACCTCAGCGGTCCGATTCCAGCCGAGCTCGGTAAGCTGTCCCATCTCTCCGTCGTCTACCTGTACCGGAACAATCTGATGGGCGAGATCCCGAGAACGCTGGGGAACCTTCCGTCCCTCGTTTCTCTCGATCTCTCGGACAACTCGATCTCCGGCGAAATTCCGCCGGAGCTCGGCCGATTGAGCAACCTCCAGCTTCTGAACCTGATGTGCAATAAGCTTGAAGGCTCTCTTCCTCCCGGGCTGGGGCGTTTGCCTCGGCTTCAGATTCTCGAGGTCTGGAACAACTCCTTGGCCGGCCCCCTCCCAGCCAGCCTTGGCCGGAACTCGTCCTTGCGGTGGCTCGACGTCTCCTCCAACTCATTCTCCGGCGAGATTCCTCCCGGACTCTGCGACGGAGAAAGCCTCTCGAAGCTCATTCTCTTCAACAACAACTTCTCCGGCCAAATCCCGGTCGGGCTGTCGGGATGCCTGAGCCTGACTCGGGTCAGGCTGCAGAGCAATCGTCTCAGCGGAGCGCTCCCGGCCGGAATAGGGCGGCTGCCGAGGTTGCAGCGGCTGGAGCTGGCGGATAACGAGATCTCCGGCGAAGTCCCCCAGGAGTTCTCCTCTTCTCCGTCCCTCTCCTTCATCGACCTCTCCCGGAATCGCCTCCGGCTTCCCCTCCCTCACAACATCCTCTCCATCCCGACCCTCCAGAGCTTCATCGCAGCCGGGAACGGGATCTTCGGTCAGATCCCGGGCGACGTGGAGGGCTGCCCTGCCCTGGCCTCCCTGGATCTCTCCGGGAACGGGCTAACCGGGGAGATCCCGGGCAGCCTGGGGAGCTGCCAGCGGCTGATTAGCCTCAATCTGGGAAGCAACGGGCTGTCAGGGGAGATCCCGGCCGCCATGGCGCTGATGCCCACCCTGGCTATTCTCGACCTCTCCCGCAACTCCCTCACAGGGCCCATCCCAGCGAGCTTCGGCGCCTCGCCTGCCCTCGAACACCTAAACGTGTCGCACAACCGGCTCTCCGGCGCGGTCCCGGTGACCAACGGATTTCTGAGCCCCGACGACCTCGCTGGGAACCCCGGCCTCTGCGGCGGTGTTCTCCCGCCCTGCACCGCCGGAGGCCCCCTTCTAGATCCCAGCCCACACGTCAGGCGGGTCCTGGTGGGCTGGCTGGCCGGACTCTCCGCCGTGCTGGCTGCGGGCGGGGGGATCCTCCTGGCGCGGAGAGTCTACGCGAGATGGCAAATCGGGGCGGGGTGCGGCGGGGGCGGGGACGGGGGAGGGGGGGCGTGGCCGTGGCGGCTGACGGCGTTCCAGCGGGTGAGCTTCACGAGCGGGGAGGTGCTGGCATGCGTGAAGGAGTCGAACGTGATCGGAATGGGGGCGACGGGGGTCGTGTACAAGGCGGAGCTGCAGCGGCACCGGGCCGTGGTGGCCGTGAAGAAGCTGTGGCGGTCGGGCGGCGGAGAGGAGGCGGAGTTTGTCGGAGAGGTGAACCTGCTGGGGAGGCTTCGGCACCGGAACATTGTGCGAATGCTGGGGTACCTGCACAACGATGAGGACACGATGCTGCTGTACGAGTACGTTCCGAACGGGAGCCTGTGGGAGGCTCTGCACGGGGAGGGCGGGCTGCTGCTGGACTGGGTGTCCAGGTACAATGTAGCCGCCGGCGTGGCCAACGGCCTCGCCTACCTCCACCACGACTGCCACCCCCCAGTCATCCACCGCGACGTCAAGTCCAGCAACATTCTGCTCGACGCCGCTCTCGAAGCCAGGATCGCCGACTTCGGCCTTGCCAGGACGATCCTCAGGAACAGCCACTCCGTCTCCACCGTCGCCGGATCCTACGGCTACATCGCCCCCGAATACGGGTACACACTGAAGGTGGATCAGAAGAGTGACATCTACAGCTTCGGGGTGGTGCTGATGGAGCTGGTGACGGGGAGGCGGCCGGTGGAGGCGGAGTTCGGCGAGGATCAGGACATAGTCGGATGGGTGAGGCAGAGGCTCAGGAGCGACCGCCCCTCACCGGCTGCCGACGTTCTGGACCGGGCCGTCGCCGGCCAGTGCAAGCACGTGCAGGAGGAGATGCTGCTGTTGCTGCGCATCGCCCTTCTCTGCACCTCCCCCTCGCCCAGGGACCGCCCCTCCATGCGAAACATCCTCACAATGCTCGCAGAGGCCAAGCCTCGCCGCAAGAGCAGCAGCGCCGCCGCCGCCGCCTCCTCCCTTCCCCACGTTCCCGTTGCCAAGGATGTTAGGCCGGTGTTCACGACGGCGCCGCCGGATTTCGACTTCATTTGATTGCACCTCCATCCATCCATCCATCCTAATAAATATGATCTCTCTTCCTCTTCTGCTTCATTTGTTTGTTCAATGTGTCCATATCACATGTAATGCTTCATTGCTTTTGATGGGTTATATTAGAAAGAAAAGCTCAGCTCATCCAAATCTCCCCATCCACATACAGAAGTTAGTCGCTTAATTGAGTTAGCTATGGCTCATCACTGCATCGTATGCGAGTAATCTAAC

Network for GWHGAAEX003408

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.11	LRRNT_2	26	65	5.20E-10
PF13855.5	LRR_8	73	129	2.90E-08
PF13516.5	LRR_6	285	301	0.72
PF13855.5	LRR_8	407	466	6.10E-09
PF13855.5	LRR_8	527	586	6.20E-08
PF00069.24	Pkinase	700	968	2.30E-46

Protein Sequence

>GWHPAAEX003408
MSRVLLLALFWSLTVLVSSSGSVIAEQEASALLTLKSGLVDPLDSLGDWKPAGADHCNFTGIRCNADGFVEGLDLSHKNLSGVISFDPFRSLSALAHLNLCCNSLSGFLPESFPFLTDLEELDLSDNNFEGSFPSGIASSFPGLRILNASGNNFAGLLPVGLSNASLLETLDLRGGFFTGKIPTGYKNLHKLRFLGLSGNNLGGRIPAEFGQLADLETLIIGYNGFDGAIPPEFGNLTDLRYLDMAVGNLSGPIPAELGKLSHLSVVYLYRNNLMGEIPRTLGNLPSLVSLDLSDNSISGEIPPELGRLSNLQLLNLMCNKLEGSLPPGLGRLPRLQILEVWNNSLAGPLPASLGRNSSLRWLDVSSNSFSGEIPPGLCDGESLSKLILFNNNFSGQIPVGLSGCLSLTRVRLQSNRLSGALPAGIGRLPRLQRLELADNEISGEVPQEFSSSPSLSFIDLSRNRLRLPLPHNILSIPTLQSFIAAGNGIFGQIPGDVEGCPALASLDLSGNGLTGEIPGSLGSCQRLISLNLGSNGLSGEIPAAMALMPTLAILDLSRNSLTGPIPASFGASPALEHLNVSHNRLSGAVPVTNGFLSPDDLAGNPGLCGGVLPPCTAGGPLLDPSPHVRRVLVGWLAGLSAVLAAGGGILLARRVYARWQIGAGCGGGGDGGGGAWPWRLTAFQRVSFTSGEVLACVKESNVIGMGATGVVYKAELQRHRAVVAVKKLWRSGGGEEAEFVGEVNLLGRLRHRNIVRMLGYLHNDEDTMLLYEYVPNGSLWEALHGEGGLLLDWVSRYNVAAGVANGLAYLHHDCHPPVIHRDVKSSNILLDAALEARIADFGLARTILRNSHSVSTVAGSYGYIAPEYGYTLKVDQKSDIYSFGVVLMELVTGRRPVEAEFGEDQDIVGWVRQRLRSDRPSPAADVLDRAVAGQCKHVQEEMLLLLRIALLCTSPSPRDRPSMRNILTMLAEAKPRRKSSSAAAAASSLPHVPVAKDVRPVFTTAPPDFDFI

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0005515	Molecular Function	protein binding
GO:0004672	Molecular Function	protein kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.940
SRP064423	SRR2545915	Juvenile tuber	6.050
SRP108465	SRR5643513	five period of Gastrodia elata	26.710
	SRR5643514	five period of Gastrodia elata	31.070
	SRR5643515	five period of Gastrodia elata	21.740
	SRR5643524	five period of Gastrodia elata	23.640
	SRR5643525	five period of Gastrodia elata	21.340
	SRR5643528	five period of Gastrodia elata	7.990
	SRR5643658	five period of Gastrodia elata	30.990
	SRR5643659	five period of Gastrodia elata	16.530
	SRR5643660	five period of Gastrodia elata	16.290
	SRR5643661	five period of Gastrodia elata	19.930
	SRR5643662	five period of Gastrodia elata	9.280
	SRR5643663	five period of Gastrodia elata	8.940
	SRR5643664	five period of Gastrodia elata	11.800
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	40.090
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	44.400
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	44.900
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	43.920
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	32.970
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	34.080
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	41.500
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	40.930
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	30.980
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.400
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	39.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	39.880
SRP279888	Gastro	Gastrodia elata tuber	5.52
	Juven	Juvenile tuber	20.26
	Mother_Gastro	Mother tuber of Gastrodia elata	2.65
	Mother_Juven	Mother tuber of Juvenile	3.12