Detail information of GWHGAAEX003410/evm.TU.scaffold_134.58


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|392383104|ref|YP_005032301.1|0gamma-glutamylcysteine synthetase [Azospirillum brasilense Sp245]
nrgi|743781214|ref|XP_010920822.1|0PREDICTED: glutamate--cysteine ligase, chloroplastic-like [Elaeis guineensis]
Swissprottr|Q1W2L8|GSH1_TOBAC0Glutamate--cysteine ligase, chloroplastic (Precursor)
trEMBLtr|A0A067K0V9|A0A067K0V9_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP25439.1}
TAIRAT4G231000glutamate-cysteine ligase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000013916851661709607-
Transcript Sequence

Network for GWHGAAEX003410

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04107.12GCS21154164.60E-92
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01919gshA Metabolic pathways map01100
Cysteine and methionine metabolismmap00270
Glutathione metabolismmap00480

Gene Ontology

GO term OntologyName
GO:0042398Biological Processcellular modified amino acid biosynthetic process
GO:0006750Biological Processglutathione biosynthetic process
GO:0003824Molecular Functioncatalytic activity
GO:0004357Molecular Functionglutamate-cysteine ligase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms29.860
SRR2545915Juvenile tuber50.330
SRP108465SRR5643513five period of Gastrodia elata29.920
SRR5643514five period of Gastrodia elata33.550
SRR5643515five period of Gastrodia elata32.320
SRR5643524five period of Gastrodia elata29.280
SRR5643525five period of Gastrodia elata29.520
SRR5643528five period of Gastrodia elata19.150
SRR5643658five period of Gastrodia elata22.860
SRR5643659five period of Gastrodia elata45.860
SRR5643660five period of Gastrodia elata48.780
SRR5643661five period of Gastrodia elata42.390
SRR5643662five period of Gastrodia elata49.330
SRR5643663five period of Gastrodia elata54.320
SRR5643664five period of Gastrodia elata47.790
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_135.980
SRR6049655Rhizomagastrodiae_C368-T10_good_130.130
SRR6049656Rhizomagastrodiae_C368-T07_good_137.900
SRR6049657Rhizomagastrodiae_C368-T07_good_135.320
SRR6049658Rhizomagastrodiae_C368-T04_good_128.710
SRR6049659Rhizomagastrodiae_C368-T04_good_128.210
SRR6049660Rhizomagastrodiae_C368-T01_good_128.660
SRR6049661Rhizomagastrodiae_C368-T04_good_128.950
SRR6049662Rhizomagastrodiae_C368-T01_good_132.360
SRR6049663Rhizomagastrodiae_C368-T01_good_130.250
SRR6049664Rhizomagastrodiae_C368-T10_good_133.620
SRR6049665Rhizomagastrodiae_C368-T10_good_133.620
SRP279888GastroGastrodia elata tuber 50.33
JuvenJuvenile tuber34.68
Mother_GastroMother tuber of Gastrodia elata 29.11
Mother_JuvenMother tuber of Juvenile 23.30