Gene detail

Detail information of GWHGAAEX003415/evm.TU.scaffold_134.63_evm.TU.scaffold_134.64

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428775193\|ref\|YP_007166980.1\|	1.00E-89	membrane protease FtsH catalytic subunit [Halothece sp. PCC 7418]
KOG	KOG0731	0	AAA+-type ATPase containing the peptidase M41 domain
nr	gi\|672142757\|ref\|XP_008795242.1\|	0	PREDICTED: ATP-dependent zinc metalloprotease FtsH [Phoenix dactylifera]
Swissprot	tr\|O19922\|FTSH_CYACA	9.00E-90	ATP-dependent zinc metalloprotease FtsH {ECO:0000255\|HAMAP-Rule:MF_01458}
trEMBL	tr\|M5XRI8\|M5XRI8_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ21640.1}
TAIR	AT5G64580	0	AAA-type ATPase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000139	1765578	1854398	-

Transcript Sequence
>GWHTAAEX003415 ATGGCGAAGGATCGTAATGCCTCTGCTGGAGAAGAAGGAAGAGGAGTAGGAGGGGTCAAAGAACTGCGAGGGGAGGAGCCTTCGAGAAGGGAGCGTCTTCCGAAGGCGAAGAGGAGGAAAGAGGAGAGCAGCAGCGAGGGTTCCAGCGATTCTGATAGCGGGGTAGATCGAGGGAAGAAGAAGAAGAGGAGGAAGGAGAGCAGGAGCAGGGGAAACCTTAGGAGGGACACGGAAAGCGATTCTGAGGTTGACAGCTCCTGCTCGGATTCGGATTCAGACTCGGAAACGGACTCCAAGGAAGATTCCGAGTCCGATTCGGAGTTGGAGTCTGAGAGTGAGGAGGAGATTAGGCGGAGGCGGCGGAAGGAGTGGAGAAGAAAGGAGAGAGAGCTGGAAAAGGAGAAGAGGAAGAGGAGGAGAAAGGAGAAGGAGAGGGAGAGGAGAAGGAAGAGAGAGAAGGAGGAGAGGAGGAAGAGGAGGAAGGAGCGAAAGAAGGAGAAGAAGAAGAAGAAGAAAGAGAAGGATAGGGGCACAAAGGGTGCTGTCACGAACTCATGGGGGAAGTACGGCGTCATCAAAGAGATCGACATGTGGAACAAGAGACCAGAGTTTACTGCATGGTTAGCTGAAGTTAAACAGGTTAATTTGGAGACCTTGCCAAACTGGGAAGAGAAACAGATGTTCAAAGAATTCATGGAAGATCACAATACTGCCACGTTTCCATCAAAGAAATACTATGATTTAGATGCTTATCATCGACGCAAGATGGATAACGAGCAGAAGAAGGGTATCAAGAAGGTCCTTGCAACAGAGCGTACAAGTTTCAATGATGAAGAACAGCGCCGACTAGAGTTGTTGGCTGAGAGGGAGAAACAGAAAGAACAGAAGGTGGAGGCATTGAAACGCTCCATGCAGAGCGGAATGGCTCAAGCGATGAAGGATCAAGCTCGGCTGAGGGAGGAGATGGCCTATCAGTATAAGCTTGGAAATTTTGAGGAGTTGAAAAATGCTGAGAAAGAGCGTATGAATAAAATGGAGAAGTTTGAAAACAAAGCGAATTTGCTGTTAGAGAGACAAGCTATATTGGGTGCTTGTTGGAGTAAGAAGCTGTTGACCTTACAGGGAAAATTGAAAGGAACAGAAATGGATCCAGCGAACTCGCATGATATTTGTTTTAGTGATTTTTTGAGGCTTCTTAACTCGGACAATGTTCATTATATTGAATATTCTAATTTCGGCCAGTACATTTCTGTTATCTTACCTTATAATAAAGATGAAGAAGGTGGGGAAGCACATGGGAATTCTGCCGAAGAAGTTATCTATCGTCGCCATATTGTTGATCGAATGCCCTTTGATGCGTGGAATGATGTATGGATGAAGTTGCATAAACAGATTATACACGTTGATGTTCTTAATACAAACTCTGTATCTGTTGAAGTTTACTCTACAATAGCAAATGCTGTTGTCTGGGCTATGCGTTTTGTGCTCTCAGTTGGTGTATACCTCTGCATTGATCATATATGTATGCCAATTTATGCCAAATATATTCCTTGTGATTTGGGTACTCCAGAGAAACCAATAAGAGAATTTCTTCCGCACCGTTCACTTGGATCGTTGGGAAAAAGCCGGGCGAAATTTATATCAGCTGAAGAAACTACAGGTGTCACATTTGCTGATTTTGCTGGCCAGGAGTACATAAAGCGTGAATTGCAGGAAATTGTGCGGATTCTTAAAAATGCGGAAGAATTTCAAGATAAAGGAATTTACTGCCCCAAAGGTGTGCTGCTTCATGGCCCGCCTGGCACTGGGAAGACTTTGTTGGCTAAGGCTATTGCTGGTGAAGCTGGACTCCCGTTCTTGGCTGCAAATGGCACTGATTTTGTTGAGATGTTTGTAGGTGTTGCAGCTGCTCGGGTGAAAGATCTTTTTGCTAATGCTAGGTCGTTTGCTCCCTCTATCATTTTTATTGATGAGATTGATGCCATTGGCAGCAAGCGCGGTGGGCCTGATATTGGCGGGGGTGGGGCTGAAAGAGAGCAAGGCTTGCTTCAGATTTTGACTGAGATGGATGGATTCAAAGAATCTGCGTCACAGGTGTTGGTCATAGGTGCAACTAATCGCTTGGATATATTGGATCCTGCACTGCTTAGGAAGGGACGTTTTGACAAAATAATAAGGGTAGGCTTGCCATCTAGAGATGGAAGGCTGGCCATATTAAAGGTACATGCTAGGAATAAATTTTTCAAATCTGACTTGGAAAAGGATGCTCTTCTTGAAGAAATTGCAGACCTTGCAGTTGATTTTACTGGAGCTGAACTTCAAAATATATTAAATGAAGCTGGTATTTTGAGCGCTAGAAAGGATAAGGACTATATTGAAAGGGAGGAACTATTGGATGCTCTTAAAAGGCAAAAAGGTACTTTTGAAACTGGTCAAGAAGATAGCACTGCGATTCCTGAGGATTTACGAATTAGATTGGCTTATAGAGAAGCTGCTGTAGCTGTTATTGCATGCTATTATCCAGATCCTCTCCGGCCATTTATACAGACTGACATAAGCACACTCAGTAGTAAGCCAAACATGCAGTATGCTGAATTTTCAGGGAAAACCTTTTCTAGGAAGTCTGATTATGTGCACTCAATAGTCCAAGCATGTACCCCGAGGGTAATAGAAGAGGAAATGTTTGGAATTGACAACTTGAGCTGGATTTCTGCAAAGGCTACATCAGAGGCATCAAAACGCTCAGAACTCTTGATTCTTCAAACCGGAATGACAGCCTTTGGGAAAGCTTACTATAGAAACTTTGGCGATCTCGTGCCAAATCTTGCAGAAAAAATAGAAGCTCTCAGGAGCGAGTATATGCGTTTTGCTGTCGAGAAATGTACTTCTGTTTTGCGTGAATACCGATCAGCAGTCGAGACAATTGCAGACATCTTACTAGAGAAAGGATGGATTAAAGCTGATGAAATATGGGACATATACAAGAAAGCTCCACGAATTCCTCAGGAACAAGTTAGTCCAGTGGATGAGTATGGTTCAATGATTTATGCTGGAAGATGGGGAATTTATGGCATCTCTCTTCCTGGAAGGGTCACCTTTGCTCCAGGAAATGTAGGGCATTCTACATTTGGGGCACCCAGGCCTATGGAGACACAGATAATCAGTGATGAAACTTGGAAGTTAATAGATGGAATTTACAACAAACGAATAGAGGAAATAAAAGAGGAAGTTTCTGCAGAGAATGAGAAAGTTGAAGAGATTCCGCAGCTTCTGCTAACCGACTATTTGCTTTGAATGCGTTAATTAATTAATACAAGGTACAGGTACAGGTGCTGATGTTTTGGTTTCATATGTGAATGGAATTCTTTTGCCCAGAGATCACACAGTTCTTTGTTCGGTGCTCCAATTGATTCAATACTTAGTTGTGTTAAATGAAATGATTTTTATCTCCAACGAACCATTCCCATAAATAATTAATTGTGTTTATTGTGCATATTTTTTATTAAATTTTGTAATACTTTTAAAAGATTTTAATTGTTTAAAAAAAGATTAAGCACGCCGT

Network for GWHGAAEX003415

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.28	AAA	594	728	2.00E-40

Protein Sequence

>GWHPAAEX003415
MAKDRNASAGEEGRGVGGVKELRGEEPSRRERLPKAKRRKEESSSEGSSDSDSGVDRGKKKKRRKESRSRGNLRRDTESDSEVDSSCSDSDSDSETDSKEDSESDSELESESEEEIRRRRRKEWRRKERELEKEKRKRRRKEKERERRRKREKEERRKRRKERKKEKKKKKKEKDRGTKGAVTNSWGKYGVIKEIDMWNKRPEFTAWLAEVKQVNLETLPNWEEKQMFKEFMEDHNTATFPSKKYYDLDAYHRRKMDNEQKKGIKKVLATERTSFNDEEQRRLELLAEREKQKEQKVEALKRSMQSGMAQAMKDQARLREEMAYQYKLGNFEELKNAEKERMNKMEKFENKANLLLERQAILGACWSKKLLTLQGKLKGTEMDPANSHDICFSDFLRLLNSDNVHYIEYSNFGQYISVILPYNKDEEGGEAHGNSAEEVIYRRHIVDRMPFDAWNDVWMKLHKQIIHVDVLNTNSVSVEVYSTIANAVVWAMRFVLSVGVYLCIDHICMPIYAKYIPCDLGTPEKPIREFLPHRSLGSLGKSRAKFISAEETTGVTFADFAGQEYIKRELQEIVRILKNAEEFQDKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLPFLAANGTDFVEMFVGVAAARVKDLFANARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKESASQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPSRDGRLAILKVHARNKFFKSDLEKDALLEEIADLAVDFTGAELQNILNEAGILSARKDKDYIEREELLDALKRQKGTFETGQEDSTAIPEDLRIRLAYREAAVAVIACYYPDPLRPFIQTDISTLSSKPNMQYAEFSGKTFSRKSDYVHSIVQACTPRVIEEEMFGIDNLSWISAKATSEASKRSELLILQTGMTAFGKAYYRNFGDLVPNLAEKIEALRSEYMRFAVEKCTSVLREYRSAVETIADILLEKGWIKADEIWDIYKKAPRIPQEQVSPVDEYGSMIYAGRWGIYGISLPGRVTFAPGNVGHSTFGAPRPMETQIISDETWKLIDGIYNKRIEEIKEEVSAENEKVEEIPQLLLTDYLL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	Biological Process	proteolysis
GO:0005524	Molecular Function	ATP binding
GO:0004222	Molecular Function	metalloendopeptidase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.730
SRP064423	SRR2545915	Juvenile tuber	11.960
SRP108465	SRR5643513	five period of Gastrodia elata	16.390
	SRR5643514	five period of Gastrodia elata	15.990
	SRR5643515	five period of Gastrodia elata	14.570
	SRR5643524	five period of Gastrodia elata	15.970
	SRR5643525	five period of Gastrodia elata	18.820
	SRR5643528	five period of Gastrodia elata	19.240
	SRR5643658	five period of Gastrodia elata	12.190
	SRR5643659	five period of Gastrodia elata	16.160
	SRR5643660	five period of Gastrodia elata	16.580
	SRR5643661	five period of Gastrodia elata	15.730
	SRR5643662	five period of Gastrodia elata	14.600
	SRR5643663	five period of Gastrodia elata	15.860
	SRR5643664	five period of Gastrodia elata	14.420
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.260
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.910
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.820
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.760
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.460
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.670
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.380
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.930
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.740
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.480
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.970
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.970
SRP279888	Gastro	Gastrodia elata tuber	12.58
	Juven	Juvenile tuber	15.76
	Mother_Gastro	Mother tuber of Gastrodia elata	11.09
	Mother_Juven	Mother tuber of Juvenile	14.86