Gene detail

Detail information of GWHGAAEX003420/evm.TU.scaffold_134.69

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1300	Vesicle trafficking protein Sec1
nr	gi\|695044147\|ref\|XP_009409807.1\|	PREDICTED: SNARE-interacting protein KEULE-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9C5X3\|KEULE_ARATH	SNARE-interacting protein KEULE
trEMBL	tr\|M0TI39\|M0TI39_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P16520_001}
TAIR	AT1G12360	Sec1/munc18-like (SM) proteins superfamily

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000139	2132784	2203794	-

Transcript Sequence
>GWHTAAEX003420 GCCAAACTGACCCTCAGTGTTCCTTCCCCTTCCCCCCTAACCCCAAGTCCACCGTGGACTCTGCGGCCCCTCGCCGGCTCCGGGAAATTCTTTTTCCGGTCGACCCTCGCCGGAATATCCCAACAGCTCTCATCTCTAGGAGGCGCTGTTACATTTCGAGGGAGAGGTTTAAGCTGCTGCCAAGGCTTTAGACGCTCCCTATCATGTCGATGTCGGATTCCGAATCCTCGTCCAGCGGGGACTACAAGAACTTCCGGCAGATCACAAGAGAACGGCTATTGTATGAAATGCTTCGATCAACTAGGGCCAAGTATCCGATTGCCAGATGGAAGGTACTCATCATGGATAAGCTTACCGTCAAGATTATGTCATGTGCTTGTAAAATGGCTGACATTACCGAAGAAGGGGTCTCATTGGTGGAAGACATTTACAAGCGAAGGCAACCAATGCCATCCATGGATGCTATATATTTTATACAACCTACCAAAGAGAACGTAGCTATGCTCCTATCAGATATGTCTGGGAGATCTCCTTTGTATAAAAGAGCATTTGTTTTCTTCAGTTCTCCTGTATCTAGGGAATTGGTACATCACATAAAGAATGATGGAAGTGTATTCACTCGCATTGGTGCACTGAATGAGATGAACTTGGAATACTTTGCCATTGACAGTCAGGGGTTCATTACTGACCATGAAAGGGCTTTAGAGGATGTATTTGGTGATCAAGCTGAAATTTTACAGACGAATAATGCCTTTATACATTCCATGGCTGCACGGATTGCAACAGTATTGGCTTCATTGAGGGAATTTCCCTATATACACTACCGTGCTGCCAAGTCATCTTTAGATGCATCTACTATGATAACCTTCCGTGATTTAATCCCAACAAAGCTTGCTGCTGCTGTCTGGCACTGTCTTGCCAGATATAAGGATTCAATTCATGACTTTCCACAAACTGAGACTTGTGAATTACTAATTATAGATCGATCAATTGATCAGATTGCACCTGTCATTCATGAATGGACATACGATGCCATATGCCATGATTTACTAAATATGGAGGGAAATAAATATGTTCAAGAGGTTCCTAGTAAAACAGGATCAACTTCTGAAAACAAGGAGGTTCTTTTGGAGGATCATGACCCTATTTGGCTTGAGCTTAGGCATGCACATATAGCAGATGCCAGTGAAAGGTTACACGCAAAAATGACCAACTTTATATCAAGAAATAAAGCTGCACAAATTCATAACAGCTCGAGAGATGGCAGTGAACTTTCAACAAGAGATTTGCAGAAATTGGTTCAAGCATTACCTCAATACAGCGAACAAATCGACAAGCTTTCCCTACATATTGAAATTGCAGGTAAGATTAACCAAGTAATCAGAGAGCATGGACTTCGTGAAATTGGACAACTTGAACAGGATCTTGTTTTCGGAGATGCAGGGACCAAAGACTTGATCAATTTTCTTAGAACAAAGCAGGATATTACTCCCGAGAATAAGATCCGTTTATTGATGATATATGCTTCTATCTTCCCTGAAAAGTTTGATGGAGATCAAGGAGAAAAGTTGATGCAACTAGCTAGGCTTTCGGCTGATGACAGAATTGCTGTGCATAATATGAGATACTTGACATTGCCAGAGACCAAAAAAGCTTCAGGAGGCTTCTCACTCCGATTTGATGTGTATAAGAAGAAACATGCTGCTAGGAAAGACCGATCTGATGAAGAAGAAACATGGCAACTATCGAAGTTTTACCCTATTATACTGGAACTGATTGAGAGGCTGAGCAAGGGGGATCTGCCTAAGAAGGAGTTCCAGTGCATGAATGATCCGAGCCCTTCGTTTCATGGAACCACCTCGAACAGCGGGTCCAATGAGCGGCTGCCTGCAGCCCATTCCGTGAGATCCTGGCGTAGCACTGCTACTTGGGCCCGGCCCCGTAATTCGGACGATGGATATTCCAGCGATTCAGTGCTTCACCGCACCCACAGTGAATTGAAAGGCATGGGCCAGCGCATCATTGTTTTCATCATTGGCGGAGCCACTCGATCCGAGCTCCGTGTGGCTCATAAGCTAACCTCAAAACTAAAGAGGGAAGTGATCCTTGGGTCGACCAGCCTCGATGATCCTGCCCAATTTATAACCAAGCTGAAGCTGCTGTCCGCAGAGGAAATATCCCTGGACGATATTCGGATATAACAAGCCTCCTAACGTCTTTAGGCCCACCTTTACTTGTGCGTTTATTATTATTTTTCTTGATAATGGCTTGCTGATTTGAATGAACTGTAAATATTATATTCATCTTAGTAAAATTTTAATTTGTTAATATATTTATATGTTGTATTAGTCAATTTTTATCAAGTATTGCTATTGTTGTTCATATTATATAGCACTATGATTGGTTCATTGAATGTTTAATTAATTAGTTAATTAATAGTGTTTTAAGCAG

Network for GWHGAAEX003420

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00995.22	Sec1	43	648	4.50E-118

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15292	STXBP1, MUNC18-1	Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:0016192	Biological Process	vesicle-mediated transport
GO:0006904	Biological Process	vesicle docking involved in exocytosis

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	24.840
SRP064423	SRR2545915	Juvenile tuber	18.890
SRP108465	SRR5643513	five period of Gastrodia elata	17.120
	SRR5643514	five period of Gastrodia elata	17.830
	SRR5643515	five period of Gastrodia elata	19.630
	SRR5643524	five period of Gastrodia elata	18.750
	SRR5643525	five period of Gastrodia elata	26.020
	SRR5643528	five period of Gastrodia elata	24.390
	SRR5643658	five period of Gastrodia elata	30.420
	SRR5643659	five period of Gastrodia elata	18.540
	SRR5643660	five period of Gastrodia elata	18.610
	SRR5643661	five period of Gastrodia elata	18.710
	SRR5643662	five period of Gastrodia elata	17.940
	SRR5643663	five period of Gastrodia elata	18.300
	SRR5643664	five period of Gastrodia elata	19.350
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.120
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	22.830
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	17.990
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	17.860
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	19.800
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.660
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	18.750
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	18.940
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.760
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	18.000
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	16.360
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	16.360
SRP279888	Gastro	Gastrodia elata tuber	21.16
	Juven	Juvenile tuber	28.92
	Mother_Gastro	Mother tuber of Gastrodia elata	24.16
	Mother_Juven	Mother tuber of Juvenile	24.76