Gene detail

Detail information of GWHGAAEX003421/evm.TU.scaffold_134.71

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672129698\|ref\|XP_008788362.1\|	2.44E-81	PREDICTED: transcription factor bHLH121 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9LT23\|BH121_ARATH	4.00E-49	Transcription factor bHLH121
trEMBL	tr\|K4B3X6\|K4B3X6_SOLLC	4.00E-70	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g111130.2.1}
TAIR	AT3G19860	1.00E-49	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000139	2205531	2217627	+

Transcript Sequence
>GWHTAAEX003421 TTATAAACCAGTTAGTCCTAACATTTTCAACAACCGACATTTCTACCCAAAAGGTCAAATGGAGCTGCCTCACTTTAAAGATCAGATGTAGGCAGTTCCACCCGTAGCTCGCAATCGCAATATGAGGTGCGAAATAGCAATAGTGGGCAGAAAGTCGCAGCCAGGTTTGGTTGTTCGATTGGATCCAAACTCCTTTCGTGGTACCAGCAGAAAACTCTATTATCGTCCGCTCAGATCGCATCAATTCAGTTTTGGAGAGCCAAGCGTCGCCGCACTCGTCGGAAGTTGAGTTAGAGCGCCAGTTACTTTCTTCTTTAGAGGCGGTGGGTCGTCTTTTGCTGCTACCTTCGCAGGTGGATGGATCAATGGAAGCTAGCTGAGGGGTTCTTCCAAGGCATGGCCGTTGCAGGTGTTTCCGACGATCGTTTTTGCCCAGACGGTGAACCGGCCGCGTGGTCCGGCCGAGTGCAAGTTCCCTGTTCGGAGTCGAGTCAACGAGTGGAGCTTGAAGCAAAGGATTCATTGAATGCTCGAAAAGTGTATAAAGCAGACCGTGAAAAATTGAGAAGAGATCGGCTCAATGAACAATTTTTGGAGTTAGGAAATGCAATAGACCCCGATAGGCCAAAGAACGACAAGGCAACCATTATCGGAGATGCAATCCAGATGTTGAAGGATTTTGCTGCTCAAGTGCAGAAACTGAAAGCGGAACACGCGTATCTATCCGAGGAGTCGAGAGAGCTGATTCGAGAGAAGAACGAACTCAGAGAAGAGAAGTCGTCTCTAAGAACCGAAATCGATACCTTGAATGCTCTCCAGCATGGGAATCGGCTAGGATGCTTGTATCCTTGGCCGACAGTCGACGCTTCGGCCATTATGGCGCCGCTGCCTTCATCCTCAGCATACCCTTTCCCCATCCCTGTCCCAGTGCCCTCGGGCCCGATTCCATTTCATGCACCGATTCCTCTTTACCCCTTCTTTCAGAATCCGAACCCTTACGGTTTTTCTTCTGGCAATCCCTACTACGCCGACCAGCATCCCATCCTTCAGCTCTCCCAGAGCCGTGCAGAAAGGAGCGCCGATTTCAGCGATGTTGTAACAGAGCTCGAGCTCAAGATGCCCGGATCTGCAAACCCTTCTTCAAACTCCAAACCGGCGAATTCATCTACGGAAGCAAGGGGAGGATGCCAGCATCGAAGCAAGGGCAATGAAAATTCCGACGAGTGCGGCCCGGGTGATCGATCACCTTTCCATCCCCGATTACCGGCGAGTTCATCCAACAGCAATGGGGCTGGATCGGTGGCCGACAGCTAGCGAATTTCATTTTAGATTTACGGAAGAATAATAAAGAAAAAAGAAGAGGAAGAGCTGCCGCTGCGGCTATTTACTTTTCTTCTGACTAACAAGCGCGTCTTCTGTCTCGATCCTATATGAAAAAGCAACCGAGTTTTCATTGTTCTACGAAGCAGGAAATGTACACACTTGCGTATGCTGGTTTCAAAAGTCATTTTTACTGTAAAAATATCATTGTTGAAAGAAAAAAAAGCAGTCAAAGCGAATGCCATATATAATGTAATAAGATCGACTAGTAATGAAAGCGTGAGGGGAACGAATGCCTTCGGCTCCAGTTTCTTGCCTTAAAAAAGAAGAGCCGAATTAGGTTAAGATGTAAGTCTCCTTGAAATGCAGTAACGTGTTCAAAGTTATTACATTTAAGATTCATCTCCTTACAGAGAGAGAGAGAGAGAGAGA

Network for GWHGAAEX003421

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.25	HLH	60	106	1.10E-05

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	Molecular Function	protein dimerization activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	17.260
SRP064423	SRR2545915	Juvenile tuber	16.420
SRP108465	SRR5643513	five period of Gastrodia elata	13.500
	SRR5643514	five period of Gastrodia elata	12.710
	SRR5643515	five period of Gastrodia elata	14.250
	SRR5643524	five period of Gastrodia elata	10.520
	SRR5643525	five period of Gastrodia elata	20.220
	SRR5643528	five period of Gastrodia elata	18.660
	SRR5643658	five period of Gastrodia elata	16.830
	SRR5643659	five period of Gastrodia elata	16.820
	SRR5643660	five period of Gastrodia elata	19.530
	SRR5643661	five period of Gastrodia elata	19.560
	SRR5643662	five period of Gastrodia elata	20.960
	SRR5643663	five period of Gastrodia elata	21.070
	SRR5643664	five period of Gastrodia elata	27.210
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	16.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.890
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.190
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	17.070
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.740
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.010
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.580
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.560
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.160
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.100
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.790
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.790
SRP279888	Gastro	Gastrodia elata tuber	18.04
	Juven	Juvenile tuber	14.47
	Mother_Gastro	Mother tuber of Gastrodia elata	16.75
	Mother_Juven	Mother tuber of Juvenile	15.86