Detail information of GWHGAAEX003430/evm.TU.scaffold_134.86


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG46284.00E-75Predicted E3 ubiquitin ligase
nrgi|695026168|ref|XP_009400365.1|3.83E-123PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Musa acuminata subsp. malaccensis]
Swissprottr|Q9M622|RMR1_ARATH1.00E-75Receptor homology region, transmembrane domain- and RING domain-containing protein 1 (Precursor)
trEMBLtr|M0SXK5|M0SXK5_MUSAM1.00E-123Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P11260_001}
TAIRAT5G661604.00E-75receptor homology region transmembrane domain ring H2 motif protein 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000013924751912503620+
Transcript Sequence

Network for GWHGAAEX003430

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02225.21PA981632.60E-06
PF13639.5zf-RING_22502931.50E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.880
SRR2545915Juvenile tuber10.930
SRP108465SRR5643513five period of Gastrodia elata20.740
SRR5643514five period of Gastrodia elata18.460
SRR5643515five period of Gastrodia elata15.890
SRR5643524five period of Gastrodia elata17.170
SRR5643525five period of Gastrodia elata21.230
SRR5643528five period of Gastrodia elata20.540
SRR5643658five period of Gastrodia elata20.780
SRR5643659five period of Gastrodia elata17.270
SRR5643660five period of Gastrodia elata14.300
SRR5643661five period of Gastrodia elata14.740
SRR5643662five period of Gastrodia elata14.550
SRR5643663five period of Gastrodia elata17.090
SRR5643664five period of Gastrodia elata15.510
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.360
SRR6049655Rhizomagastrodiae_C368-T10_good_116.940
SRR6049656Rhizomagastrodiae_C368-T07_good_117.460
SRR6049657Rhizomagastrodiae_C368-T07_good_113.820
SRR6049658Rhizomagastrodiae_C368-T04_good_113.140
SRR6049659Rhizomagastrodiae_C368-T04_good_113.590
SRR6049660Rhizomagastrodiae_C368-T01_good_114.990
SRR6049661Rhizomagastrodiae_C368-T04_good_117.900
SRR6049662Rhizomagastrodiae_C368-T01_good_116.910
SRR6049663Rhizomagastrodiae_C368-T01_good_114.100
SRR6049664Rhizomagastrodiae_C368-T10_good_117.180
SRR6049665Rhizomagastrodiae_C368-T10_good_117.180
SRP279888GastroGastrodia elata tuber 9.57
JuvenJuvenile tuber15.79
Mother_GastroMother tuber of Gastrodia elata 5.56
Mother_JuvenMother tuber of Juvenile 6.62