Detail information of GWHGAAEX003438/evm.TU.scaffold_135.2
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|695067394|ref|XP_009380612.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q8S9M4|PP198_ARATH | 0 | Pentatricopeptide repeat-containing protein At2g41080 |
| trEMBL | tr|I1PGQ7|I1PGQ7_ORYGL | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA03G0355300.1} |
| TAIR | AT2G41080 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000133 | 88099 | 90232 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003438
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 85 | 114 | 0.044 |
| PF01535.19 | PPR | 116 | 144 | 0.0025 |
| PF01535.19 | PPR | 147 | 176 | 0.015 |
| PF01535.19 | PPR | 247 | 276 | 0.15 |
| PF13041.5 | PPR_2 | 347 | 395 | 1.10E-07 |
| PF01535.19 | PPR | 421 | 446 | 0.016 |
| PF14432.5 | DYW_deaminase | 520 | 644 | 3.40E-41 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.750 |
| SRR2545915 | Juvenile tuber | 0.640 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.340 |
| SRR5643514 | five period of Gastrodia elata | 1.940 | |
| SRR5643515 | five period of Gastrodia elata | 1.300 | |
| SRR5643524 | five period of Gastrodia elata | 1.280 | |
| SRR5643525 | five period of Gastrodia elata | 0.980 | |
| SRR5643528 | five period of Gastrodia elata | 0.220 | |
| SRR5643658 | five period of Gastrodia elata | 0.190 | |
| SRR5643659 | five period of Gastrodia elata | 2.790 | |
| SRR5643660 | five period of Gastrodia elata | 1.470 | |
| SRR5643661 | five period of Gastrodia elata | 2.730 | |
| SRR5643662 | five period of Gastrodia elata | 2.540 | |
| SRR5643663 | five period of Gastrodia elata | 2.370 | |
| SRR5643664 | five period of Gastrodia elata | 1.670 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.230 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.040 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.870 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.460 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.720 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.880 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.500 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.210 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.830 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.390 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.390 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.85 |
| Juven | Juvenile tuber | 1.60 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.04 | |
| Mother_Juven | Mother tuber of Juvenile | 0.66 |