Gene detail

Detail information of GWHGAAEX003445/evm.TU.scaffold_135.11

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1556	26S proteasome regulatory complex, subunit RPN8/PSMD7
nr	gi\|672124062\|ref\|XP_008785408.1\|	PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A isoform X1 [Phoenix dactylifera]
Swissprot	tr\|O24412\|PSD7A_ARATH	26S proteasome non-ATPase regulatory subunit 7 homolog A
trEMBL	tr\|M0TS54\|M0TS54_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P20510_001}
TAIR	AT5G05780	RP non-ATPase subunit 8A

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000133	383059	407247	-

Transcript Sequence
>GWHTAAEX003445 CACAAACTTAGATCCAAACTCACTACAACGGCAAGAAAAAATGACTCTTTTGTGGGGATAATAACCAAACAAATCCCCACAGGTTCAGTCCACTAATACCCGAATTAATCACAGTAGGCCTACAGCTATTTATACTACTCATGAAATACTTGCAAATGCATTAATGAAAATACGATCTCCGTGATTCTGAGCCTATTGTCGATTCTTCTCTCATTTCTGCGCCTTTCTCAAAACATCTCTTCCTCGAGAATTCCAGGGCTGCGAGGAAGAAGAAGATGGATGTTATAAAGACGCAGCAGATCTCGTTACGTCCGATTGAGAAGGTCATCGTGCACCCTCTCGTCCTTTTGAGCATCGTCGACAACTACAACCGCGTTGCACGTGACACACGCAAGCGGGTCATCGGCGTACTCCTTGGCAGCTCTTCCAAGAGCGTCGTCGATGTATCAAACAGCTACGCAGTGCCTTTTGAAGAAGATGAGAAGGATCCAAGCATTTGGTTCTTGGATCATAATTACCATGAGGCCATGTTTTCTATGTTCAAGAGAATAAATGCTAAGGAACATGTTGTTGGTTGGTATAGCACTGGTCCAAAACTGCGTGAGAATGATTTGGATGTCCATGCTCTGTTTTCTGATTATGTTCCCAATCCTGTCTTGGTCATAATTGATGTTCAACCTAAGGAGTTGGGAATACCAACCAAAGCTTACTATGCTGTTGAAGAGGTTAAGGAGAATGCCACTCAGAAAAGTCAGAAGGTATTTGTGCACGTGCCTTCTGAAATTGCTGCTCACGAAGTTGAAGAAATTGGAGTTGAGCATTTGTTGAGGGATGTCAAGGATACTACTGTTAGTACTCTTGCAACAGAGGTTACAAGCAAACTGTCAGCCTTAAAAGGCCTTGATGCAAGGCTTCGTGAGATAAGGGGTTATTTAGATCTTGTAATTGACCGGAAGCTCCCGCTGAATCATGAGATTCTTTACCATTTGCAGGATGTATTCAACCTCCTCCCTAACCTAAATGTGAATGAATTGATAAAGGCATTTGCTGTAAAGACAAATGATATGATGCTGGTTATTTACCTTTCCTCCCTTATCCGAAGCGTCATTGCGCTTCACAACCTCATCAACAACAAGATGCTAAACAAGGAACACGAGAAAGCTGAAGATGCCAAGCCTGTGGTTGTGCCGAGTGCTGCAGGAAGCTAGTGCTTGTAATAAGAATTGTGGGGATGGTGGCTTTTGCTTGTTTCTGGCTACATGTTTTTCATTTTCAGAAAAGTTTCTTCACTCTTCTTTGAAGATGAGGATGAAGATGAAGATGAAGAGGAGGCTCTGTCCGTCTGTGAACGATTTGTTGTCAAAATACTGACAATATAAGTTATATTTTTGATTTAAATTTTTTTTTCTTAATGGTTAAAAGTTTCAGTTAACACATCGTACAGGGGAGGAGGATCGATGATGCCTGATCGCTGTTCTAATCATCCCCAAGAAACTATTATGATGTTAATGTCACGTTGAAGTAAATGCCATTTTTTTTCTTCACGTTTTTCTCTGCTTTGCAATAAGATTAGCAGCCTTAAAATACAAAGTGTTTTATTGACACTAATGTGATGAATATAAGAGAAATTTCTCACGGTTTCTTGTTTAGAAGTAGATGCTTGCAAATGCTATAACCTTATTTGCAGAACTAAAGCAGAGTTGAGGAATTTTTACCGACAA

Network for GWHGAAEX003445

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01398.20	JAB	15	124	7.20E-30
PF13012.5	MitMem_reg	174	285	2.50E-36

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	JAMM

KEGG pathway

KO	Enzyme	pathway	mapID
K03038	PSMD7, RPN8	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding
GO:0005838	Cellular Component	proteasome regulatory particle

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	64.770
SRP064423	SRR2545915	Juvenile tuber	83.100
SRP108465	SRR5643513	five period of Gastrodia elata	68.960
	SRR5643514	five period of Gastrodia elata	81.870
	SRR5643515	five period of Gastrodia elata	66.870
	SRR5643524	five period of Gastrodia elata	83.280
	SRR5643525	five period of Gastrodia elata	66.190
	SRR5643528	five period of Gastrodia elata	74.000
	SRR5643658	five period of Gastrodia elata	70.230
	SRR5643659	five period of Gastrodia elata	57.930
	SRR5643660	five period of Gastrodia elata	59.170
	SRR5643661	five period of Gastrodia elata	63.880
	SRR5643662	five period of Gastrodia elata	56.420
	SRR5643663	five period of Gastrodia elata	55.580
	SRR5643664	five period of Gastrodia elata	52.840
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	60.780
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	61.820
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	70.430
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	56.510
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	66.750
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	58.710
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	59.220
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	59.080
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	75.150
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	66.650
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	81.010
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	81.010
SRP279888	Gastro	Gastrodia elata tuber	83.13
	Juven	Juvenile tuber	78.60
	Mother_Gastro	Mother tuber of Gastrodia elata	67.67
	Mother_Juven	Mother tuber of Juvenile	68.77