Detail information of GWHGAAEX003449/evm.TU.scaffold_135.16


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|389860838|ref|YP_006363078.1|8.00E-19ORC complex protein Cdc6/Orc1 [Thermogladius cellulolyticus 1633]
KOGKOG22278.00E-166Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase
nrgi|743846351|ref|XP_010938812.1|0PREDICTED: cell division control protein 6 homolog [Elaeis guineensis]
Swissprottr|Q710E8|ORC1A_ARATH9.00E-41Origin of replication complex subunit 1A {ECO:0000303|PubMed:16179646}
trEMBLtr|M0TCH1|M0TCH1_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P33780_001}
TAIRAT1G072708.00E-166Cell division control, Cdc6

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000133545756567531+
Transcript Sequence

Network for GWHGAAEX003449

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13401.5AAA_221202388.90E-18
PF09079.10Cdc6_C3814603.40E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02213CDC6 Cell cycle map04110
Cell cycle - yeastmap04111
Meiosis - yeastmap04113

Gene Ontology

GO term OntologyName
GO:0051301Biological Processcell division
GO:0006270Biological ProcessDNA replication initiation

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms44.600
SRR2545915Juvenile tuber33.140
SRP108465SRR5643513five period of Gastrodia elata22.270
SRR5643514five period of Gastrodia elata22.870
SRR5643515five period of Gastrodia elata23.910
SRR5643524five period of Gastrodia elata25.420
SRR5643525five period of Gastrodia elata20.710
SRR5643528five period of Gastrodia elata19.980
SRR5643658five period of Gastrodia elata20.220
SRR5643659five period of Gastrodia elata24.450
SRR5643660five period of Gastrodia elata23.550
SRR5643661five period of Gastrodia elata22.020
SRR5643662five period of Gastrodia elata20.640
SRR5643663five period of Gastrodia elata23.060
SRR5643664five period of Gastrodia elata19.100
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_125.740
SRR6049655Rhizomagastrodiae_C368-T10_good_132.050
SRR6049656Rhizomagastrodiae_C368-T07_good_125.930
SRR6049657Rhizomagastrodiae_C368-T07_good_129.270
SRR6049658Rhizomagastrodiae_C368-T04_good_136.110
SRR6049659Rhizomagastrodiae_C368-T04_good_138.560
SRR6049660Rhizomagastrodiae_C368-T01_good_130.730
SRR6049661Rhizomagastrodiae_C368-T04_good_132.160
SRR6049662Rhizomagastrodiae_C368-T01_good_118.890
SRR6049663Rhizomagastrodiae_C368-T01_good_123.520
SRR6049664Rhizomagastrodiae_C368-T10_good_120.280
SRR6049665Rhizomagastrodiae_C368-T10_good_120.280
SRP279888GastroGastrodia elata tuber 28.98
JuvenJuvenile tuber41.89
Mother_GastroMother tuber of Gastrodia elata 50.08
Mother_JuvenMother tuber of Juvenile 46.67