Detail information of GWHGAAEX003455/evm.TU.scaffold_135.24
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|357404197|ref|YP_004916121.1| | 2.00E-17 | arginyl-tRNA-protein transferase [Methylomicrobium alcaliphilum 20Z] |
| KOG | KOG1193 | 7.00E-180 | Arginyl-tRNA-protein transferase |
| nr | gi|743867574|ref|XP_010905351.1| | 0 | PREDICTED: arginyl-tRNA--protein transferase 1-like [Elaeis guineensis] |
| Swissprot | tr|Q9ZT48|ATE1_ARATH | 3.00E-179 | Arginyl-tRNA--protein transferase 1 |
| trEMBL | tr|M5X6P9|M5X6P9_PRUPE | 0 | Arginyl-tRNA--protein transferase 1 {ECO:0000256|PIRNR:PIRNR037207} |
| TAIR | AT3G11240 | 7.00E-180 | arginine-tRNA protein transferase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000133 | 889124 | 922358 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003455
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04376.12 | ATE_N | 27 | 97 | 2.80E-25 |
| PF04377.14 | ATE_C | 344 | 487 | 3.80E-52 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016598 | Biological Process | protein arginylation |
| GO:0004057 | Molecular Function | arginyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 59.040 |
| SRR2545915 | Juvenile tuber | 40.330 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.380 |
| SRR5643514 | five period of Gastrodia elata | 16.310 | |
| SRR5643515 | five period of Gastrodia elata | 23.580 | |
| SRR5643524 | five period of Gastrodia elata | 17.960 | |
| SRR5643525 | five period of Gastrodia elata | 18.830 | |
| SRR5643528 | five period of Gastrodia elata | 22.770 | |
| SRR5643658 | five period of Gastrodia elata | 17.020 | |
| SRR5643659 | five period of Gastrodia elata | 17.850 | |
| SRR5643660 | five period of Gastrodia elata | 15.890 | |
| SRR5643661 | five period of Gastrodia elata | 17.530 | |
| SRR5643662 | five period of Gastrodia elata | 18.020 | |
| SRR5643663 | five period of Gastrodia elata | 20.540 | |
| SRR5643664 | five period of Gastrodia elata | 13.370 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 19.640 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.180 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 16.760 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 26.630 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 22.510 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 27.500 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 21.510 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 22.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.360 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.960 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.930 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.930 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.43 |
| Juven | Juvenile tuber | 22.17 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.37 | |
| Mother_Juven | Mother tuber of Juvenile | 37.18 |