Detail information of GWHGAAEX003456/evm.TU.scaffold_135.25
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|433604670|ref|YP_007037039.1| | 1.00E-06 | hypothetical protein BN6_28570 [Saccharothrix espanaensis DSM 44229] |
| KOG | KOG4328 | 0 | WD40 protein |
| nr | gi|695075234|ref|XP_009384848.1| | 0 | PREDICTED: protein DAMAGED DNA-BINDING 2 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q6NQ88|DDB2_ARATH | 0 | Protein DAMAGED DNA-BINDING 2 |
| trEMBL | tr|M0RUZ6|M0RUZ6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P24160_001} |
| TAIR | AT5G58760 | 0 | damaged DNA binding 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000133 | 924816 | 936092 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003456
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 170 | 202 | 0.062 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10140 | DDB2 | Ubiquitin mediated proteolysis | map04120 |
| Nucleotide excision repair | map03420 | ||
| p53 signaling pathway | map04115 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.680 |
| SRR2545915 | Juvenile tuber | 1.400 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.460 |
| SRR5643514 | five period of Gastrodia elata | 3.380 | |
| SRR5643515 | five period of Gastrodia elata | 2.670 | |
| SRR5643524 | five period of Gastrodia elata | 2.640 | |
| SRR5643525 | five period of Gastrodia elata | 7.900 | |
| SRR5643528 | five period of Gastrodia elata | 0.510 | |
| SRR5643658 | five period of Gastrodia elata | 0.240 | |
| SRR5643659 | five period of Gastrodia elata | 1.900 | |
| SRR5643660 | five period of Gastrodia elata | 1.760 | |
| SRR5643661 | five period of Gastrodia elata | 3.160 | |
| SRR5643662 | five period of Gastrodia elata | 0.760 | |
| SRR5643663 | five period of Gastrodia elata | 3.560 | |
| SRR5643664 | five period of Gastrodia elata | 2.110 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.310 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.740 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.900 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.560 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.020 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.860 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.980 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.370 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.880 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.970 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.080 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.080 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.23 |
| Juven | Juvenile tuber | 2.11 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.05 | |
| Mother_Juven | Mother tuber of Juvenile | 2.40 |