Detail information of GWHGAAEX003458/evm.TU.scaffold_135.27


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41972.00E-68FOG: PPR repeat
nrgi|672182704|ref|XP_008811604.1|0PREDICTED: pentatricopeptide repeat-containing protein At2g13420, mitochondrial-like [Phoenix dactylifera]
Swissprottr|Q0WP85|PP150_ARATH0Pentatricopeptide repeat-containing protein At2g13420, mitochondrial (Precursor)
trEMBLtr|M0TWI0|M0TWI0_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P01230_001}
TAIRAT3G49730_12.00E-68Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000013310747001077874+
Transcript Sequence

Network for GWHGAAEX003458

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.19PPR1241520.36
PF13041.5PPR_22292742.00E-10
PF01535.19PPR3093380.0041
PF13041.5PPR_23403864.00E-12
PF13041.5PPR_24134607.00E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms4.940
SRR2545915Juvenile tuber3.840
SRP108465SRR5643513five period of Gastrodia elata9.800
SRR5643514five period of Gastrodia elata7.680
SRR5643515five period of Gastrodia elata7.860
SRR5643524five period of Gastrodia elata7.400
SRR5643525five period of Gastrodia elata9.680
SRR5643528five period of Gastrodia elata8.750
SRR5643658five period of Gastrodia elata9.100
SRR5643659five period of Gastrodia elata8.520
SRR5643660five period of Gastrodia elata10.270
SRR5643661five period of Gastrodia elata9.520
SRR5643662five period of Gastrodia elata11.940
SRR5643663five period of Gastrodia elata10.840
SRR5643664five period of Gastrodia elata8.370
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_16.210
SRR6049655Rhizomagastrodiae_C368-T10_good_110.070
SRR6049656Rhizomagastrodiae_C368-T07_good_16.260
SRR6049657Rhizomagastrodiae_C368-T07_good_16.930
SRR6049658Rhizomagastrodiae_C368-T04_good_17.800
SRR6049659Rhizomagastrodiae_C368-T04_good_17.630
SRR6049660Rhizomagastrodiae_C368-T01_good_16.670
SRR6049661Rhizomagastrodiae_C368-T04_good_17.280
SRR6049662Rhizomagastrodiae_C368-T01_good_15.670
SRR6049663Rhizomagastrodiae_C368-T01_good_15.350
SRR6049664Rhizomagastrodiae_C368-T10_good_16.510
SRR6049665Rhizomagastrodiae_C368-T10_good_16.510
SRP279888GastroGastrodia elata tuber 8.30
JuvenJuvenile tuber11.09
Mother_GastroMother tuber of Gastrodia elata 16.87
Mother_JuvenMother tuber of Juvenile 21.40