Gene detail

Detail information of GWHGAAEX003460/evm.TU.scaffold_135.29

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|15668875\|ref\|NP_247678.1\|	2.00E-24	C/D box methylation guide ribonucleoprotein complex aNOP56 subunit [Methanocaldococcus jannaschii DSM 2661]
KOG	KOG2574	0	mRNA splicing factor PRP31
nr	gi\|296086542\|emb\|CBI32131.3\|	0	unnamed protein product [Vitis vinifera]
Swissprot	tr\|O04658\|NOP5A_ARATH	1.00E-25	Probable nucleolar protein 5-1
trEMBL	tr\|A0A061E5S9\|A0A061E5S9_THECC	0	Pre-mRNA processing ribonucleoprotein binding region-containing protein isoform 1 {ECO:0000313\|EMBL:EOY00380.1}
TAIR	AT1G60170	0	pre-mRNA processing ribonucleoprotein binding region-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000133	1132036	1277996	+

Transcript Sequence
>GWHTAAEX003460 ATGCGGGGGGTGCTGCTATTAGGGTCACAGCCTTCGTATGAGTGGAGCAATCTTGAGCGGAGCGGAAGAATACGGCGTCACAGAGAAGGTGGGAAGCGGCGAGAGGAAAGAGAGATCGAAAAGCTCAAGACGATCGAATTCGAGGTGGTTGTTGGCTGTCCCGAAGCGGATATTGAGAAAGATAAAAGTTACTTGTTTGCCCACCTTCTGAATAAGCATGATCTTGAAGAATTATCAGATGATGATGCTCCTGTTCATGATGAAGAGGAAGCAGAGGTTGGTGACATGGAAGAAGATGGAGATGGTGATATGGATGACCTTGAAGCTCTTAATTATGATGACTTAGACAGTGTTTCAAAATTACAGAAATCACAAAGATATAATGATATCATGCAAAAAGTTGAAGATGCACTTAAGAATGGATCAGATATTTCTGGTCAAGGAATGGTTTTGGAGGATGATCCTGAGTATCAGCTAATTGTAGAGTGCAATGGTCTATCAGTGGATATTGAAAACGAAATTATTATTATCCATAATTTTATACGTGACAAATACAGGATGAAGTTCCCTGAACTTGAATCTCTTGTCAATCACCCTATCGATTATGCTCGAGTGGTTAAAAAAATTGGGAATGAGATGGACTTGACTCTCGTAGATTTGGAAGGACTCTTACCCTCTGCTATTATAATGGTAGTTTCTGTTACCGCATCAACTACCAGCGGCAAGCGCCTTCCAGATGATATTTTGAATAAAGCAATTGATGCTTGTGATCGGGCCCTTATGCTTGATTTAGCTAAGAAAAAGGTATTGGATTTTGTTGAGAGTAGAATGGGATACATAGCTCCAAATCTCTCTGCTATTGTTGGAAGCGCTGTTGCTGCAAAACTTATGGGAACTGCAGGCGGTTTGTCCGCTTTAGCAAAAATGCCTGCTTGTAATGTACAACTTCTTGGGGCCAAGAAAAAGAATCTTGCTGGCTTTTCAACTGCAACTTCACAATTTCGTGTTGGTTATCTTGAGCAAGCAGAGATTTTTCAGAGCACTCCTCCCTCTCTAAGAACACGTGCTTGCAGGCTACTGGCTTCAAAATCAACTCTTGCAGCTAGAGTAGATTCAACAAGAGGAGATCCAACTGGAAAGACTGGAAGAAGCTTACGAGAAGAGATTCGTAAAAAGATCGAAAAGTGGCAAGAACCACCCCCTGCAAAGCAGCCGAAACCCCTACCTGTTCCAGACTCAGAACCAAAGAAGAAAAGAGGTGGCCGCCGTTTAAGAAAGATGAAAGAAAGATATGCTGTTACCGATATGAGGAAGCTAGCAAATAGGATGCAATTTGGAGTGCCAGAAGAGAGTTCATTAGGTGACGGCCTGGGTGAGGGATATGGCATGCTTGGTCAGGCAGGGAGTGGAAGGCTGCGTGTGTCAGTTGCCCAAAGTAAACTGGCTACTAAGGCCTCAAAAAGGTTCAAGGAGAAGCAATATGGAAGTAGTGGCGCTACTTCTGGATTGACATCTAGTCTGGCATTCACTCCTGTACAAGGAATTGAACTGTCAAACCCACAATCTTATGGAAATCTTCTTGGAACTTCTGCCATTAACCCATGCAAGACAAAGTCACTTGTGCATATAGCCTCGCCCTACTTCAAGAAATATCATTCACGAGCCCAAATCACAAAAGTCAAGTCCACGCAGATGATGAGCTCGTACACTCAGAAGCTCGGTGTAGGATTAGAGAGCCTGCAGCGGCGCAATTCGCAAGCCTTAGTGGAGCTTCACCGACATTTTATAATTCATACGGCTCCAATCTTTGGTGAGGAGTTCGACGTTGGGAGCTTCATTGCCATGGCTTCGAAGCAGATGGAGTATATCTTGAGTAAACTATCGCTACTCAGTTACCCTCGGAGCAACATCCCCTCGCAGTCTTTCCTCTACGCGGGCGTTGAAAGATACGTGCTCCTCGAATGGCTTTTTTTCAGGCTTTTGGGGGATAGATCTCCATTTACGCAGCAGAGCTGGCAAGATGACAGTATGTATCGTGAAGAGGAAACTGCTCGCATCCAGTATTTGGCTGAGATAGCACACTTCTTGGGAATCTTACCAATAGTTGATACAGAAGCCATTCAGGGAAGAGGAAGCTATGAAGAGCGTGCTGAATTGCTCCATCTCATTGTAGACCTTGTCGAAGCAAGTTGTTCTGCTGACAATCCCGAGTGGAGTGTTGATGAACAACTTGCGAAGGATGTACAACTCCTAGATTCAATTGCTGAGAAGCAAGCTCAAATTTTCTCTGAAGAGTTTAAGCTGTTTCCTGCTGATGTGCAGATTCAATCAATTTATCCACTCCCAGACATATCTGAATTGGAGTTACAACTTTCTGAGCATTCAAAGAAGTTATCAAATCTACAGCAGATGGTTCAGGAGTTGGCATCTAAGCATGACTATAATCCTAATGAGGATTATGCAGAGACAGAATTAAAACTACAAAATCAGTTGGAATCTTTCCTGGAAACTGTTAGATCATTCAATCTGATTTATACAAAGGAAATTCGTCCTTGGACGAATATGATGGAGGTACCTCAACTGCATGGATTCGGTCCTGCTGCTAATCGTTTGTTAGAAGCGTACAATACACTGCTAAAGTTCTTGGGAAGCTTGAGGAGCCTCCGGGATGCTCATTCAGCCATGTCCGGCGGACCTAGCTCAATGCTCAGTGAACCATCATCTGTGAACAAACTTATATTTGATTGCGAATCTGCGGTCACATTTGTCAACCGCAATCTCGCCATCCTCTCCACATCTGTTGCGCGAGAACAAGAGGAGAGCCTGTGA

Network for GWHGAAEX003460

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01798.17	Nop	167	395	7.50E-71
PF09785.8	Prp31_C	403	520	5.50E-42
PF06694.10	Plant_NMP1	620	937	2.70E-173

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12844	PRPF31	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0051011	Molecular Function	microtubule minus-end binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	35.140
SRP064423	SRR2545915	Juvenile tuber	32.850
SRP108465	SRR5643513	five period of Gastrodia elata	23.310
	SRR5643514	five period of Gastrodia elata	26.190
	SRR5643515	five period of Gastrodia elata	23.670
	SRR5643524	five period of Gastrodia elata	24.090
	SRR5643525	five period of Gastrodia elata	24.610
	SRR5643528	five period of Gastrodia elata	23.550
	SRR5643658	five period of Gastrodia elata	27.320
	SRR5643659	five period of Gastrodia elata	28.980
	SRR5643660	five period of Gastrodia elata	32.650
	SRR5643661	five period of Gastrodia elata	29.590
	SRR5643662	five period of Gastrodia elata	30.070
	SRR5643663	five period of Gastrodia elata	32.850
	SRR5643664	five period of Gastrodia elata	32.240
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	27.480
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	29.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	26.990
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	27.130
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	28.820
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	30.500
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.070
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.550
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	26.010
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	29.030
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	26.790
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	26.790
SRP279888	Gastro	Gastrodia elata tuber	35.40
	Juven	Juvenile tuber	33.57
	Mother_Gastro	Mother tuber of Gastrodia elata	31.63
	Mother_Juven	Mother tuber of Juvenile	40.26