Detail information of GWHGAAEX003462/evm.TU.scaffold_135.31
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502234|ref|YP_001957951.1| | 1.00E-11 | hypothetical protein Aasi_0851 [Candidatus Amoebophilus asiaticus 5a2] |
| KOG | KOG0167 | 9.00E-130 | FOG: Armadillo/beta-catenin-like repeats |
| nr | gi|743766668|ref|XP_010913578.1| | 0 | PREDICTED: U-box domain-containing protein 19 [Elaeis guineensis] |
| Swissprot | tr|O80742|PUB19_ARATH | 3.00E-130 | U-box domain-containing protein 19 |
| trEMBL | tr|V4TSX0|V4TSX0_9ROSI | 2.00E-166 | Uncharacterized protein {ECO:0000313|EMBL:ESR53026.1} |
| TAIR | AT1G60190 | 9.00E-130 | ARM repeat superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000133 | 1314831 | 1317938 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003462
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module13 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04564.14 | U-box | 272 | 340 | 1.70E-15 |
| PF00514.22 | Arm | 406 | 442 | 4.20E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016567 | Biological Process | protein ubiquitination |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004842 | Molecular Function | ubiquitin-protein transferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.830 |
| SRR2545915 | Juvenile tuber | 8.430 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.050 |
| SRR5643514 | five period of Gastrodia elata | 9.470 | |
| SRR5643515 | five period of Gastrodia elata | 34.420 | |
| SRR5643524 | five period of Gastrodia elata | 7.750 | |
| SRR5643525 | five period of Gastrodia elata | 194.490 | |
| SRR5643528 | five period of Gastrodia elata | 105.650 | |
| SRR5643658 | five period of Gastrodia elata | 134.580 | |
| SRR5643659 | five period of Gastrodia elata | 71.960 | |
| SRR5643660 | five period of Gastrodia elata | 11.040 | |
| SRR5643661 | five period of Gastrodia elata | 63.800 | |
| SRR5643662 | five period of Gastrodia elata | 84.470 | |
| SRR5643663 | five period of Gastrodia elata | 35.230 | |
| SRR5643664 | five period of Gastrodia elata | 235.580 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 58.290 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 36.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 26.800 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 30.290 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 36.080 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 57.540 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 62.350 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 36.530 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.260 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 41.940 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 28.660 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 28.660 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 24.04 |
| Juven | Juvenile tuber | 1.75 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 35.80 | |
| Mother_Juven | Mother tuber of Juvenile | 11.18 |