Gene detail

Detail information of GWHGAAEX003465/evm.TU.scaffold_135.34

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2253	1.00E-179	U1 snRNP complex, subunit SNU71 and related PWI-motif proteins
nr	gi\|743766678\|ref\|XP_010913584.1\|	0	PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 25-like [Elaeis guineensis]
Swissprot	tr\|Q9M9G6\|CTF64_ARATH	4.00E-07	Cleavage stimulating factor 64 {ECO:0000303\|PubMed:12379796}
trEMBL	tr\|W1PD68\|W1PD68_AMBTC	0	Uncharacterized protein {ECO:0000313\|EMBL:ERN05898.1}
TAIR	AT1G60200	1.00E-179	splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000133	1349306	1353107	-

Transcript Sequence
>GWHTAAEX003465 ATGATTCGGCCTGGTTATCCATTTCGTCCCATGCCTGCTGTTGGTATGATTCCTCAAATTCCTAGACTTCCAGGGGTTCGCCCACTACCTCCCATGGTTACCCCTGTGGTACGGCCAGTTGTTCCCATACTTCCTCCTGCAGAGAAGCCACAAACCACAGTTTATGTTGGGAAGATTGCTCCAACAGTTGATAATGACTATCTTCTGTATATTCTTCGGACTTGTGGCCCAGTCAAGAGTTGGAAACGTGCTCAAGATCCTTCTGATGGAAAACCCAAAGGGTTTGGGTTTTGTGAGTTTGAGGCGGCTGAAGGTGTTCTTCGAGCTCTCCGTCTACTTAGTAGATTGAATATTGATGGTCAGGAACTTGTGTTGAATATTAATCAAGCAACTAGAGAATATCTTGAACGCTATGTTGAAAAGAAAACAGAAAGAGAAAAAGAGAAGATTGAAGAAACTGAAGATGCTTTGGCTGAAGGCAACAAGGGTGCACCTTCTGAAAAGAAACCACAATCAAACCCTGCTATTGATGAAGAAAAAAAGGATTCTGAAGATTCCAGCGAGAAAGGAAACCATGACATCCATAAGTTTGGTATTGTTTCAGATGAGGATCGTGAAGCTGACAAGGATGCTTTAGATAAACTTACAAATATGCTAGAAGAGAGATTAAAATCAAACCCATTGCCCCCTCCCCCTCCTCTGCCAATTTCAGCAGATGGCCCTGCTAAGTCAACCTCTGAGGTTCCTTCTAGATCCAAAGATGGTGATTCAGATATTGATATCATGAAGAGTGATGCTGCAGAAGAAAAGAATGATGAAGAAACTACAAGTGAAAATAAGCCCGTTGATCATGACAAGCCTGAGTCTAGCTCACCAGATAGGAGGCGGCATGATAGAAGGAGCAGAGAAAAAGATAGAGAACGTGATTTGAAACGGGAGAAAGAAAGAGAACTTGAGAGGTATGAACGAGAAAGACAACGTGAAAGAGTGAAGAGGGAGAGGGAACGGGAGGTGAGAATACGTGAAGCTGAACGGTTATACAAAGATCGTGTGAGGGATTGGGAAGCTAGGGAAAGGGAGAGAGAATATCAGAGGCAGCACGAGAAGGATAGGGAGAAGGATAGACAACGGGAGCGAAGAAAAGAGATACTTGGGGATGAAGAAGGAAGCGATGAAGATGATGATGATACAAGGAAAAGGAGACGAAGAAGCAACATGCTTGAGGAGAGGCGACGAAAGAGAATTAGGGAAAAGGAAGAAGATTTGGTTGATTTATTAAATGAAGAGGAAGAGATTGCAGAAGCAAAAAAGAGGAAAGTTGAAGACCTGAAAGCAAGCACAAATTCTGAATCTGTGCTTTCTGAAGTGACCAAGGAGAGTGAAAAGCAGAATATTAATGAAGAAGAGATGATTGTGGAAAGAGGTGAAACTGCTTTAGAACAGGCAGAAAGAGCTGTTTCTAATACTGTTGGAAATGGGATTTATATAATTGACAGCAGTGAATTGACTGCAAGTTCAGCTGCTGTGTCAGAGATGAAGTTGATTGATGGCCCTGTTCGGAAGCTAGGGTTTGGCTTGGTAGGTTCAGGAAAGCGAACCACTGTTCTATCTGTTTTCCATCAGGAGGATGATGAAGATGTAGAAGAGAAAAAGATGAGACCTTTGGTACCCATTGATTATTCTAATGAGGAGCTACAGGCTGTGAAAGCAAATATGGCTGCAGCCACACCAAATATTGTTGCAGCTGCTGAATTTGCCAAACGCATCTCTACAAATCCTAAAGAAGAGAAGAATGAAATTGAAAGGGAAAGAAATGGTCGATTTAATGACAGATTGAGCCGAAGGGATCGTGATCGAAGTGAGCATGAAAGTAATCATTCCAGGAGTGAAATCAAGGAAAAGATGCATGATAAAGTTTCTGATCGAGATGATAAAATGAAAACAGAAAACAAAAAACTTTTAGATGCAAAACAGTTGATTGACATGATTCCAAAGACTAAAGAAGAGCTTTTTGCATATGAAATAAACTGGTCTATTTATGACAAGCATTCGTTGCATGAAAGAATGAGGCCCTGGATTTCAAAGAAGATAACTGAATTTCTTGGAGAGGAGGAGGCAACTTTGGTGGATTATATTGTTTCGAGCACAAAGGAACATGTTAGAGCATCAAAAATGCTAGAGCTGCTTCAATCTATTTTGGATGATGAGGCTGAGATGTTTGTTCTCAAAATGTGGAGGATGTTGATTTTTGAAGTCAAGAAGGTTGAGACAGGCCTGTCTGTTAAGTCAAAGAACTAA

Network for GWHGAAEX003465

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	54	123	9.70E-10
PF01480.16	PWI	687	751	4.20E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12822	RBM25, S164	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0006397	Biological Process	mRNA processing
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	122.780
SRP064423	SRR2545915	Juvenile tuber	172.440
SRP108465	SRR5643513	five period of Gastrodia elata	108.860
	SRR5643514	five period of Gastrodia elata	101.960
	SRR5643515	five period of Gastrodia elata	105.730
	SRR5643524	five period of Gastrodia elata	101.690
	SRR5643525	five period of Gastrodia elata	129.060
	SRR5643528	five period of Gastrodia elata	94.310
	SRR5643658	five period of Gastrodia elata	116.500
	SRR5643659	five period of Gastrodia elata	138.400
	SRR5643660	five period of Gastrodia elata	162.010
	SRR5643661	five period of Gastrodia elata	125.740
	SRR5643662	five period of Gastrodia elata	124.430
	SRR5643663	five period of Gastrodia elata	173.840
	SRR5643664	five period of Gastrodia elata	148.760
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	135.190
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	104.210
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	119.720
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	152.400
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	156.430
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	182.330
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	135.730
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	151.090
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	90.640
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	112.200
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	85.100
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	85.100
SRP279888	Gastro	Gastrodia elata tuber	222.48
	Juven	Juvenile tuber	222.67
	Mother_Gastro	Mother tuber of Gastrodia elata	228.65
	Mother_Juven	Mother tuber of Juvenile	258.46