Detail information of GWHGAAEX003473/evm.TU.scaffold_135.43
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|317122878|ref|YP_004102881.1| | 2.00E-09 | ribonuclease H [Thermaerobacter marianensis DSM 12885] |
| KOG | KOG1812 | 3.00E-105 | Predicted E3 ubiquitin ligase |
| nr | gi|672120867|ref|XP_008783715.1| | 0 | PREDICTED: uncharacterized protein LOC103702868 [Phoenix dactylifera] |
| Swissprot | tr|Q9LVX0|ARI3_ARATH | 7.00E-14 | Probable E3 ubiquitin-protein ligase ARI3 |
| trEMBL | tr|W1PAK0|W1PAK0_AMBTC | 2.00E-173 | Uncharacterized protein {ECO:0000313|EMBL:ERN04968.1} |
| TAIR | AT5G60250 | 3.00E-105 | zinc finger (C3HC4-type RING finger) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000133 | 1649637 | 1672714 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003473
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13456.5 | RVT_3 | 171 | 281 | 2.90E-17 |
| PF00097.24 | zf-C3HC4 | 307 | 351 | 1.70E-05 |
| PF01485.20 | IBR | 380 | 445 | 1.60E-10 |
| PF01485.20 | IBR | 465 | 513 | 5.80E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0046872 | Molecular Function | metal ion binding |
| GO:0004523 | Molecular Function | RNA-DNA hybrid ribonuclease activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 109.090 |
| SRR2545915 | Juvenile tuber | 83.390 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 45.540 |
| SRR5643514 | five period of Gastrodia elata | 41.770 | |
| SRR5643515 | five period of Gastrodia elata | 41.310 | |
| SRR5643524 | five period of Gastrodia elata | 41.650 | |
| SRR5643525 | five period of Gastrodia elata | 21.650 | |
| SRR5643528 | five period of Gastrodia elata | 22.480 | |
| SRR5643658 | five period of Gastrodia elata | 18.810 | |
| SRR5643659 | five period of Gastrodia elata | 64.000 | |
| SRR5643660 | five period of Gastrodia elata | 70.320 | |
| SRR5643661 | five period of Gastrodia elata | 63.230 | |
| SRR5643662 | five period of Gastrodia elata | 49.540 | |
| SRR5643663 | five period of Gastrodia elata | 57.000 | |
| SRR5643664 | five period of Gastrodia elata | 52.240 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 55.720 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 64.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 47.840 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 61.800 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 49.260 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 56.870 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 53.030 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 51.840 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 42.980 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 45.140 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 43.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 43.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 60.22 |
| Juven | Juvenile tuber | 98.57 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 38.97 | |
| Mother_Juven | Mother tuber of Juvenile | 77.88 |